Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1700 ATGGCATTTCGTCTTGAGTTCGTTCTTCTGGCTTTTCTCTTTTCTGTGAGCGTCGCTTTGGTGAACTCGGACGACGGAGCGACGCTGTTGGAGATAAAGAAGTCATTCAGGGATATTGACAGTGTTCTATATGACTGGGCTGCGGACTCACCATCTTCAGATTATTGTGCGTGGAGAGGGATCGCATGCGACAATATCACCTTCAATGTTATTGCACTTAATCTGTCTGGCCTGAATCTTGAGGGGGAGATTTCACCTGCAATTGGAAATCTCAAAGGCTTGCTGTCCATTGATTTAAGGGAAAATAAGCTATCTGGCCAGATTCCAGATGAGATTGGCGATTGTGCTTCAATGAAGAATCTGGACCTGTCGTTTAACGAGATATACGGAGACATACCCTTTTCAATATCAAAGCTGAAACAGCTTGAAATGCTAGTCTTGAAAAATAATCGCTTGATTGGACCAATTCCTTCAACCTTGTCTCAGATTCCGAACTTGAAGGTTTTAGATCTGGCGCAGAATAATCTTACTGGGGAAATACCAAGGCTTATATACTGGAATGAAGTTCTTCAGTATCTTGGTTTGCGGGCGAACAATTTAGTTGGTTCACTCTCTCCAGATTTGTGCCACCTCACTGGTTTATGGTATTTCGATGTGAGAAACAACACTTTAACTGGAAGCATACCTCAAAATATAGGCAACTGTACCGCCTTCCAGGTCTTAGACTTGTCCTACAACCAGCTAACTGGAGAGATTCCATTTAATATTGGTTTCCTGCAAGTAGCCACTTTATCACTGCAAGGAAATTGGCTTTCTGGTCAAATTCCATCCGTGATTGGTCTCATGCAGGCTCTTGCTGTACTAGACTTGAGCTGCAACATGTTAAGCGGAAAAATCCCAGCTATCTTGGGAAATTTGACTTACACGGAGAAATTATATTTGCACAGCAACAAGTTAACTGGACCTATTCCTTTGGAGCTTGGAAATATGACAAAGCTTCATTATTTGGAATTGAACGATAATCATTTAACGGGGCATATTCCAGCTGAACTAGGGAAACTCACCGACTTGTTTGACCTGAATCTTGCTAACAACAATCTTGAAGGGCCCATCCCTGATAACCTTAGTTCATGCACAAATCTTAACAGCCTCAATGTACATGGAAACAAGTTGTATGGGTCCATTCCACCTGCTTTCCAAAGGCTAGAGAGTATGACATATCTAAATCTTTCCTCAAACAATCTTTTGGGACCCATTCCCATTGCACTGTCACGGATTGGTAACTTGGATACTCTGGATATTTCTAGCAACAAAATAAATGGCTCTATTCCTTCCTCCCTTGGTGATTTGGAGCATCTCCTAAAGCTGAATTTGAGCAGAAACCATTTAACGGGGTTCATTCCAGCAGAGTTTGGAAATCTAAGAAGCGTGATGGAAATAGATCTTTCAAATAATCATCTCTCGGGTTCAGTTCCTGACGAACTTAGCCAGCTTCAGAACATGTTTTCCCTAAAACTAGAAAACAACAATTTATCAGGAGATATGAGCGCATTGATGAATTGCTTGAGTCTTACCGAACTAAATGTTTCCTACAATAACCTTGCCGGTGACATCCCTACAAGCAACAACTTCTCAAGGTTTTCCTCCGACAGTTTCATTGGTAATCCTGGTCTCTGTGGGTATTGGCTCGACTACCATTGTCACGAGTCTCGCCCAACTGAGCGAGTCACAATTTCTAAAGCAGCTATCATAGGGATTGCTCTTGGTGCCCTTGTGATTCTTCTCATGATCTTGGTGGCTGCATGCCGACCAAACAAACCCACACCTTTTCTAGATGGATCACTTGATAAACCAGTCTATTACCCAACACCAAAGCTCGTGATCCTTAACATGAATATGGCTCTTCATGTGTACGATGACATCATGAGAATGACCGAGAACTTGAGTGAGAAGTATATAATTGGTTATGGCGCATCCAGTACAGTGTACAAATGTGTTCTTAAGAATTGTAAGCCGGTGGCTATTAAAAGAATCTATACTCATTATCCGCAGAGTTTGAAGGAATTTGAGACAGAACTCGAAACAGTAGGAAGCATCAAGCATAGGAATTTAGTCAGTCTTCAAGGCTACTCCTTGTCGCCCTCTGGAAACCTTCTCTTCTATGACTACATGGAAAATGGAAGTCTCTGGGATCTCCTTCATGGTCCGAGCAAGAAGAAAAAACTTGAGTGGGACACTCGACTTAGGATTGCTCTTGGATCAGCTCAAGGGCTAGCATATCTTCACCATGACTGTTGTCCCAGAATTATCCATAGGGATGTGAAGTCATCTAACATTCTATTGGACCAGGAATTTGAGGCCCATCTCACTGATTTTGGTATTGCCAAGAATCTATGCCCCACAAAATCTCACACTTCTACTTACGTTATGGGCACTATTGGCTATATCGATCCCGAATATGCTCGAACTTCTCGTCTCACTGAAAAGTCCGATATTTATAGCTATGGCATTGTTCTACTTGAATTGCTTACAGGAAAGAAAGCGGTGGACAATGACTCCAATCTTCATCATCTGATTTTATCGAAGACAGCAAATAATGCTGTTATGGAGACAGTTGATCCTGAGGTTACAGCTACTTGCAAGGATCTTGGAGCTATAAAGAAGGTGTTTCAGCTTGCTCTTTTATGCACGAAAAGACAATCATCCGATCGGCCTACTATGCACGAAGTGACCCGGGTCCTAGGAAGTTTAGTACTGTTGGATGCACCACCACCAAAACAAACAGCACAAACTCCAACAGGAACTACTGTGGCTCCAGTTTCCAAACTGCCTTCTTACATCGAAGAGTATGCAAATCTAAAAGCTTCCAATATGTTGAATTACCCAACCGTGAGCACCTCAGATGCACAACTGTTCCTAAAATTTGGGGAGGTAATATCTCAGAACAGTGAGTGA 2955 42.27 MAFRLEFVLLAFLFSVSVALVNSDDGATLLEIKKSFRDIDSVLYDWAADSPSSDYCAWRGIACDNITFNVIALNLSGLNLEGEISPAIGNLKGLLSIDLRENKLSGQIPDEIGDCASMKNLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLTGEIPRLIYWNEVLQYLGLRANNLVGSLSPDLCHLTGLWYFDVRNNTLTGSIPQNIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNWLSGQIPSVIGLMQALAVLDLSCNMLSGKIPAILGNLTYTEKLYLHSNKLTGPIPLELGNMTKLHYLELNDNHLTGHIPAELGKLTDLFDLNLANNNLEGPIPDNLSSCTNLNSLNVHGNKLYGSIPPAFQRLESMTYLNLSSNNLLGPIPIALSRIGNLDTLDISSNKINGSIPSSLGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDLSNNHLSGSVPDELSQLQNMFSLKLENNNLSGDMSALMNCLSLTELNVSYNNLAGDIPTSNNFSRFSSDSFIGNPGLCGYWLDYHCHESRPTERVTISKAAIIGIALGALVILLMILVAACRPNKPTPFLDGSLDKPVYYPTPKLVILNMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYTHYPQSLKEFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDLLHGPSKKKKLEWDTRLRIALGSAQGLAYLHHDCCPRIIHRDVKSSNILLDQEFEAHLTDFGIAKNLCPTKSHTSTYVMGTIGYIDPEYARTSRLTEKSDIYSYGIVLLELLTGKKAVDNDSNLHHLILSKTANNAVMETVDPEVTATCKDLGAIKKVFQLALLCTKRQSSDRPTMHEVTRVLGSLVLLDAPPPKQTAQTPTGTTVAPVSKLPSYIEEYANLKASNMLNYPTVSTSDAQLFLKFGEVISQNSE 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12643837 12649687 + Conep04aG0175400.1 Cone4ag1700 436678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1700 984 SMART serkin_6 648 920 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1700 984 Gene3D Ribonuclease Inhibitor 22 186 IPR032675 -
Cone4ag1700 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 187 - -
Cone4ag1700 984 Gene3D Phosphorylase Kinase; domain 1 623 723 - -
Cone4ag1700 984 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524(InterPro)
Cone4ag1700 984 ProSiteProfiles Protein kinase domain profile. 648 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1700 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 188 297 - -
Cone4ag1700 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 619 723 - -
Cone4ag1700 984 Pfam Leucine rich repeat N-terminal domain 23 64 IPR013210 -
Cone4ag1700 984 Gene3D Transferase(Phosphotransferase) domain 1 724 921 - -
Cone4ag1700 984 Pfam Leucine rich repeat 428 487 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 SUPERFAMILY L domain-like 257 565 - -
Cone4ag1700 984 SMART LRR_typ_2 211 235 IPR003591 -
Cone4ag1700 984 SMART LRR_typ_2 163 187 IPR003591 -
Cone4ag1700 984 SMART LRR_typ_2 91 115 IPR003591 -
Cone4ag1700 984 SMART LRR_typ_2 330 354 IPR003591 -
Cone4ag1700 984 SMART LRR_typ_2 450 473 IPR003591 -
Cone4ag1700 984 SMART LRR_typ_2 474 498 IPR003591 -
Cone4ag1700 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1700 984 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 SUPERFAMILY Protein kinase-like (PK-like) 626 914 IPR011009 -
Cone4ag1700 984 SUPERFAMILY L domain-like 22 259 - -
Cone4ag1700 984 Gene3D Ribonuclease Inhibitor 297 571 IPR032675 -
Cone4ag1700 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 298 570 - -
Cone4ag1700 984 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 312 913 IPR051716 -
Cone4ag1700 984 Gene3D Ribonuclease Inhibitor 187 296 IPR032675 -
Cone4ag1700 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 724 924 - -
Cone4ag1700 984 Pfam Leucine Rich Repeat 523 541 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 380 402 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 165 184 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 285 306 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 332 354 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 359 378 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 310 330 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 239 258 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Leucine Rich Repeat 405 424 IPR001611 GO:0005515(InterPro)
Cone4ag1700 984 Pfam Protein kinase domain 651 911 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0874 Cone-Chr14:5625953 Cone4ag1700 Cone-Chr4:12643837 2.72E-173 dispersed
Cone4ag1700 Cone-Chr4:12643837 Cone9ag0880 Cone-Chr9:4293527 3.71E-70 dispersed
Cone4ag1700 Cone-Chr4:12643837 Cone7ag1617 Cone-Chr7:10987657 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82802 PF07690 MFS_1 9.40E-14 CL0015 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1700 K20718 - vvi:100259283 1637.47