Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1704 ATGAAATCAACAGACGACTACTGCCCCTTGCCGGAATTTCAAACACAGGTTTATACGAAGCGAATATCGTCGAGGATTTCACTTTCCGACGTTATGAGCAATCCCATTTCTCCGATATCCATCCACGATCTTTCTTCTACTCTAGCCGGCTCGGAGCTTTATGTATTCTCATTTGCAGAGCTAAGAGTTATAACTCGTGATTTCTCAGTAACTAATCTGATCGGAGAAGGTGGGTTCGGACCGGTTTATAAAGGTTTTATCGATAACAAACTTAACCACTGGATGGAGGAGGCTCAGCCGGTCGCCGTCAAGTTACTCGACTCTCATGATGGCCTGCAAGGGCACGAAGAATGGCTGGCAGAGATAGTATTTCTCGGACAGCTTAGGCATCCGAATCTGGTCAAATTGATCGGATACTGCTGGGAGGAGGAGAGTAGACTTCTTGTTTACGAATACATGGCAAGGGGCAGCCTTGAGAATCAACTCTTCACAAGATATTCTACTGTCTTACCATGGTCAACCAGAATGAAAATAGCACTGGATGCGGCCAAGGGCCTAGAGTTTCTCCACCAGGCAGACCCTCCTGTTATTTACAGGGACTTCAAACCTTCCAACATTCTATTAAACTCGGATTATACAGCCAAACTATCAGATTTTGGCCTAGCAAAGGACGGTCCAGATCATGACGACCAAGACACGAAGGAAACGACAAGAATAATGGGCACGCAAGGCTACGCAGCCCCTGAGTACATAAACACAGGTCAGCTGTCAATAAAGATGGACGTGTACAGCTTCGGCGTGGTTCTACTAGAGCTGATCACAGGCAAACGCTGGATGAAAATCAGAGTTGGAGAATACTGTTGGAGGCGTTTGGTGAAGGACCCGAAAAAGGTGTGGAGGGTAGTAGACCCTAGGCTTGAAGGGCAGTTTTCAGTGAAGGGGGCACAAAACGCCGCTGCATTGGCTTATAAATGTTTGAGTAGTGATCCAAAACGAAGACCTTGCATGAGTGAAGCGGTGAGCGTGCTGGAGACTCTGCAGGGGTTTGAGGACTTGTTTTTTGGGACGTTTGTTTACATGGTGCCAAATGGGTATTATGGAGAAGATTGTGGGCCGGATCGGGACAGGAAAAAGATTAGTGATGATGAAACTAAATTAAAGATAATTAATTTTTGTCAAAAAGAAATATTGCACAACCAACTAAAGCAATAA 1212 45.46 MKSTDDYCPLPEFQTQVYTKRISSRISLSDVMSNPISPISIHDLSSTLAGSELYVFSFAELRVITRDFSVTNLIGEGGFGPVYKGFIDNKLNHWMEEAQPVAVKLLDSHDGLQGHEEWLAEIVFLGQLRHPNLVKLIGYCWEEESRLLVYEYMARGSLENQLFTRYSTVLPWSTRMKIALDAAKGLEFLHQADPPVIYRDFKPSNILLNSDYTAKLSDFGLAKDGPDHDDQDTKETTRIMGTQGYAAPEYINTGQLSIKMDVYSFGVVLLELITGKRWMKIRVGEYCWRRLVKDPKKVWRVVDPRLEGQFSVKGAQNAAALAYKCLSSDPKRRPCMSEAVSVLETLQGFEDLFFGTFVYMVPNGYYGEDCGPDRDRKKISDDETKLKIINFCQKEILHNQLKQ 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12665524 12667122 + Conep04aG0175800.1 Cone4ag1704 436682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1704 403 FunFam Serine/threonine-protein kinase BIK1 36 152 - -
Cone4ag1704 403 Pfam Protein kinase domain 69 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1704 403 Gene3D Phosphorylase Kinase; domain 1 37 152 - -
Cone4ag1704 403 PANTHER OS01G0588500 PROTEIN-RELATED 48 347 IPR050823 -
Cone4ag1704 403 SUPERFAMILY Protein kinase-like (PK-like) 46 344 IPR011009 -
Cone4ag1704 403 Gene3D Transferase(Phosphotransferase) domain 1 153 352 - -
Cone4ag1704 403 ProSiteProfiles Protein kinase domain profile. 68 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1704 403 CDD STKc_IRAK 74 346 - -
Cone4ag1704 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1704 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1704 Cone-Chr4:12665524 Cone9ag0883 Cone-Chr9:4309948 7.67E-120 dispersed
Cone17ag0951 Cone-Chr17:7435497 Cone4ag1704 Cone-Chr4:12665524 5.62E-142 wgd
Cone20ag0295 Cone-Chr20:1322293 Cone4ag1704 Cone-Chr4:12665524 5.51E-141 wgd
Cone4ag1704 Cone-Chr4:12665524 Cone7ag1620 Cone-Chr7:11009440 3.14E-264 wgd
Cone4ag1704 Cone-Chr4:12665524 Cone7ag0790 Cone-Chr7:5208165 3.03E-141 wgd
Cone4ag1704 Cone-Chr4:12665524 Cone7ag0020 Cone-Chr7:94079 1.28E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82803 PF07690 MFS_1 9.40E-14 CL0015 Cone PK