Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1709 ATGTCGCAGTTTTCCTCTGCCATCTCCAACGATGGCGATGACGATTTCCAGATTCCTCTCACCCAAACTTTTGCTTCTACCATTCATTCAACCTCACGGAAACCTCTAAAATCTTTCCAATCCACTCTTCCCTCTCGTCCACCTAAAAAATCAAAGCATCCCATCACCACAGCCATCGGCAAGGAGAACTTAGGGTTAACTTCGCCTCCGTCATCTAGCATTCAAACCGAGGTTAGTTCTAGATCCCTTCATCTTTGTAACGACAGAGTCGACTCTGGATTCAATGATATCCAGGGATGTAAATCACTTGATAATGATTTGGGCTCTAGCTTGGATTCAATAGAGCTGAGCATTGTCGGTTGCAGTTATACTTCCTGTGATGGGAATTTGAGGGAAACGAGTGTTAGAAAGGATATTAGCGATTCTCATGAATGTGATGATAAGAACGGATTTAAAATAAATGGGGGTTATTTGCAAAATTCAATTGAATCGAGGTTAATGAAGTCGAGATCGAATTGCTTTGTCAATGTTGATGAAAGAAGACTGACCGAATCAAACGGTGAGGATTATGAGGCAGAAGGAGAACTAGATTTGTTGCTCAAGCTGTGTTCACAAGTAGAAGAGGAAGACAATCTTAACTTTGGGGGCTTTCTTGGAGAGAAAACAGAGGGTTTAAGAGAGGAGGGAGGTTTGGTTCAATGTCCATTGTGTGGAGTCGACATCTCAGACTTGAGCAATGAGCAACGTCTGCTCCACACCAATGACTGTCTTGACAAATTGGATGACCAAGCTCAAGATGCTGCTCTGATCAATGAAGGAAAGGGAGATCCTGTTCCTGGGCAAGTTCTTGATGAATCTAGATTCTCTCCCGTATTAAAGTGGCTGCAGTATCTGGGTTTATCAAGATATGAAGGTATTTTTGTTCGGGAAGAGATTGATTGGGATACCCTGCAGTGGCTCACGGATGAGGATCTTTTCGGCATAGGTATTACTGCACTTGGTCCACGGAAGAAGATTGTACATTCTCTCAGTGAAATCAGAAAAGGTGCTGCCCAGGCAGTTGCCAAATGCATGGATTCACATGTCCTCACTGAAGATGGAAACCGGAGCATCTGTGGTCAAGAGAGAGATCCTAACAATTCTGAAGCAACGGTTGATGAAACTAGTAAACTATCTGCGAACAAGTTGATAACTGATTATTTTCCAGGTGCTACTAATAGGAAGAGAGTTTGCACCCCATCTAGTGGACAGAACATGATAAGAAAAAATGGATCGGACTCTGGCCGTAAAAGCATAAAACGAAGAAGTAATATCATGAATCCAAAGTTCAGGAATGTACCCATCTGGTGTTGCATACCAGGAACACCGTTCAGAGTGGATGCTTTCCGATATCTCAGAGGGGATTGCGTACATTGGTTTCTCACTCACTTTCATTTGGATCATTATCAAGGTCTAACAAGGTCTTTCTGTCATGGAAAGATATATTGTTCAGACATTACAGCTAAACTCGTGAATATGAAAATTGGGATCCCTTGGGAAAGGCTCCAAGTCTTACCCATCAACCAGAAAGTTAACATTGCTGGGACCAATGTAACCTGTTTGGATGCCAACCACTGTCCTGGTGCTTTAATTATGCTCTTTGAACCACCCAATGGTAAGCATGTTCTACATACGGGGGATTTTCGATTTTGTGAGAAAATGGCAAGCTCACCTGTTTTGCAAACACGTTGCATTGATACTCTCATTCTTGATACTACTTACTGTAACCCCCAGTATGATTTCCCTAAGCAGGAGGCTGTAATACAATTTGTTATCGAAGCCATTCAAGCTGAAGCTTTCAATCCTAGAACGCTTTTTCTAATTGGTAGCTACACTATAGGTAAAGAGCGAATATTCTTGGAAGTAGCTCGTGTACTCCGAAAGAAGGTGCATGTAACTGCTTCAAAGCTGCGTATTCTGAAATGTCTGGGATTCCCAGAGGAGGATATGCAATGGCTTACGTCAAATGAACAGGAAAGCCAGATACACATTGTACCTTTGTGGACGGTTGCAAGCTTCAAAAGACTGAAACACATATCTAATCAATATGCGAGTCGCTTCAGTCTTATTGTTGCTTTCTCTCCTACTGGTTGGACATTTGGTAAGGGAAAGAGATCTCTCGGCAAAAGGTCGCAGCAGGGTACCATGATAAGGTACGAGGTTCCTTATAGCGAACATAGCAGCTTTACAGAGCTGAAGGAATTTGTGAAGCTTATATCTCCTGATAACTTGATACCAAGTGTGAATAACCATGGCTCTGACTCTGCCCGTGACATGATATCAATTTTACGATCTTGA 2337 42.4 MSQFSSAISNDGDDDFQIPLTQTFASTIHSTSRKPLKSFQSTLPSRPPKKSKHPITTAIGKENLGLTSPPSSSIQTEVSSRSLHLCNDRVDSGFNDIQGCKSLDNDLGSSLDSIELSIVGCSYTSCDGNLRETSVRKDISDSHECDDKNGFKINGGYLQNSIESRLMKSRSNCFVNVDERRLTESNGEDYEAEGELDLLLKLCSQVEEEDNLNFGGFLGEKTEGLREEGGLVQCPLCGVDISDLSNEQRLLHTNDCLDKLDDQAQDAALINEGKGDPVPGQVLDESRFSPVLKWLQYLGLSRYEGIFVREEIDWDTLQWLTDEDLFGIGITALGPRKKIVHSLSEIRKGAAQAVAKCMDSHVLTEDGNRSICGQERDPNNSEATVDETSKLSANKLITDYFPGATNRKRVCTPSSGQNMIRKNGSDSGRKSIKRRSNIMNPKFRNVPIWCCIPGTPFRVDAFRYLRGDCVHWFLTHFHLDHYQGLTRSFCHGKIYCSDITAKLVNMKIGIPWERLQVLPINQKVNIAGTNVTCLDANHCPGALIMLFEPPNGKHVLHTGDFRFCEKMASSPVLQTRCIDTLILDTTYCNPQYDFPKQEAVIQFVIEAIQAEAFNPRTLFLIGSYTIGKERIFLEVARVLRKKVHVTASKLRILKCLGFPEEDMQWLTSNEQESQIHIVPLWTVASFKRLKHISNQYASRFSLIVAFSPTGWTFGKGKRSLGKRSQQGTMIRYEVPYSEHSSFTELKEFVKLISPDNLIPSVNNHGSDSARDMISILRS 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12683020 12686377 + Conep04aG0176300.1 Cone4ag1709 436687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1709 778 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 444 771 - GO:0003684(PANTHER)|GO:0006303(PANTHER)|GO:0035312(PANTHER)|GO:0036297(PANTHER)
Cone4ag1709 778 Pfam DNA repair metallo-beta-lactamase 662 764 IPR011084 -
Cone4ag1709 778 Gene3D - 452 761 IPR036866 -
Cone4ag1709 778 Pfam Beta-lactamase superfamily domain 473 592 IPR001279 -
Cone4ag1709 778 MobiDBLite consensus disorder prediction 29 47 - -
Cone4ag1709 778 FunFam DNA cross-link repair 1A protein 593 739 - -
Cone4ag1709 778 CDD SNM1A-1C-like_MBL-fold 435 590 - -
Cone4ag1709 778 Pfam SAM domain (Sterile alpha motif) 286 345 IPR001660 GO:0005515(InterPro)
Cone4ag1709 778 Gene3D - 593 739 - -
Cone4ag1709 778 MobiDBLite consensus disorder prediction 373 388 - -
Cone4ag1709 778 MobiDBLite consensus disorder prediction 368 388 - -
Cone4ag1709 778 SMART SAM_4 283 349 IPR001660 GO:0005515(InterPro)
Cone4ag1709 778 Gene3D - 284 361 IPR013761 -
Cone4ag1709 778 ProSiteProfiles SAM domain profile. 286 349 IPR001660 GO:0005515(InterPro)
Cone4ag1709 778 FunFam DNA ligase 6 452 611 - -
Cone4ag1709 778 SUPERFAMILY SAM/Pointed domain 286 349 IPR013761 -
Cone4ag1709 778 CDD SAM_superfamily 291 345 - -
Cone4ag1709 778 MobiDBLite consensus disorder prediction 412 432 - -
Cone4ag1709 778 SUPERFAMILY Metallo-hydrolase/oxidoreductase 457 761 IPR036866 -
Cone4ag1709 778 MobiDBLite consensus disorder prediction 29 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1709 K15340 - - csv:101218609 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1709 Cone-Chr4:12683020 Cone6ag1281 Cone-Chr6:10240385 8.57E-17 dispersed
Cone7ag1627 Cone-Chr7:11025345 Cone4ag1709 Cone-Chr4:12683020 6.54E-24 transposed
Cone4ag1709 Cone-Chr4:12683020 Cone7ag1626 Cone-Chr7:11024417 1.60E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34