Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1713 ATGGATTCAGAAGAAATTGTGAAAGCGAGATTGGAAGAATTGCAGAAAGATTTTGGGAAAAAGCTGAAATTCGAGAACGCGGTTTCTTCTCTCATTTCCCTCCTCCGCGACCGCTACCTATCTGCTTCTCCTTCCCTCCGGAAATCGTTGTATTCTGCAATTTGCCGCGTCGGAACTGTTCTTAAAACTCGCTACACCGCTCCTGGTTTCTGGCTTTCCGGCCTCTCACTCTTCGAGCTTGCCCTAACGCTCCTCTCCGATCCTTCCGAGAAACAGTACGTGCTCTCTTGCATTGCTCAGGCTAAGGAGATTTTGCATCAGGAAGAGGACAATGCTCCAGCTCAACCCTCGCGAAATAGAGGAGGATATCTCTTTGAGGGACACCTGACCGTTGATCCAGAGCCGTCCCAACCTCAATGGCTGGTGCAATCGAATCTCTTGTCTACTGCTGCTACTCTCTTGGCCGCTGGATCTTCTCAGAATCTAGCTGATAACAATATCTTAACGGAAAATGCTGCAAGTGTTTTTCAATCCCTCATTGAAAATATGGATGGTGTTTTGCCAGAGATCTTGGAAGATGTGAATCAACCTCCAAGAGTTCCACCTGCAAGTAAAGAAGTAGTTGCGAAACTTCCAATCATAACTATAACAGAGGAAGTGCTTACGAATCTCAGAAGCCTGGGAAAAGATGCAGAGTGTGCTATTTGCAAGGAGGAGTTGGTTATGAATGACAAGATGCAGGAGTTGCCTTGCAAGCACACATTCCACCCACCTTGTCTAAAGCCATGGCTGGATGAGCATAATTCTTGTCCAATTTGTCGGCATGAGTTGCAAACAGATGATCATGCATATGAGAGCTGGAAGGAAAGAGAGAAGGAGGCTGAAGAAGAGAGGAAAGGCGCTGCAAATGCCGTACGTGGTGGTGAATACATGTATGTTTAG 942 46.5 MDSEEIVKARLEELQKDFGKKLKFENAVSSLISLLRDRYLSASPSLRKSLYSAICRVGTVLKTRYTAPGFWLSGLSLFELALTLLSDPSEKQYVLSCIAQAKEILHQEEDNAPAQPSRNRGGYLFEGHLTVDPEPSQPQWLVQSNLLSTAATLLAAGSSQNLADNNILTENAASVFQSLIENMDGVLPEILEDVNQPPRVPPASKEVVAKLPIITITEEVLTNLRSLGKDAECAICKEELVMNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYV 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12700966 12702526 - Conep04aG0176700.1 Cone4ag1713 436691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1713 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Cone4ag1713 313 CDD RING-H2_RNF126-like 232 274 - -
Cone4ag1713 313 SMART ring_2 233 273 IPR001841 -
Cone4ag1713 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 120 278 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone4ag1713 313 FunFam E3 ubiquitin-protein ligase RNF181 191 280 - -
Cone4ag1713 313 Coils Coil 284 304 - -
Cone4ag1713 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 280 IPR013083 -
Cone4ag1713 313 Pfam Ring finger domain 232 274 IPR001841 -
Cone4ag1713 313 SUPERFAMILY RING/U-box 226 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1713 Cone-Chr4:12700966 Cone5ag0646 Cone-Chr5:2757199 6.08E-22 dispersed
Cone4ag1713 Cone-Chr4:12700966 Cone7ag1631 Cone-Chr7:11039458 3.12E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1713 K16274 - gmx:100800189 407.142