Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1716 ATGGTGTCTGAGATGGAGAGCGATAACATTGAAGACACGGAGATTGAGGTCCTTCCTTCAATGTGGCCTGAAGATATAGGACCTGATGTTGGAAAGCAATTCAATGTTGAAAAGCCAGGACAAGATCAAGATATGCTTGAAGAAGTTACCATAATGGAGGAGCCAACTATAGTTGATTTCAAGCGCCTTTTAGAGCTAACCAACTATACTGAGAAGGGCTCATCTCAATTGCAATATCTTGCGAAACAGTGGGAGTATAAACAGGCAGAAGTCGTTCGCCTTCTCAAAGAAGAACTAGACATTTTATGCGAACAGAAAAGGGAAGTTGAGCTCAAGAAATTGGAAATCATCGAGGAGCATCAGTTTGAGGAAGAGTTTGCCGGTGATAAACATCCGATTTCTATTTTGGAAGAAGTAATTGATATTTGGCAAGCTGTTCCTAGAAGGAAAAATGATGTTGTTTTTCAGAACAAGAGAGTTGAAATAGAAGCTGAGTATGATACTGTGACTTACTGGAAGCAGCGGGCAATGCACTTTGAGAAACTGTTGGAAGCAAGCCTACAAAGAGAGCATATTCTTGAGGAAAAGCTTCAGGAAAGCATAAATAATCTTGAAAAGCAATCCTTGCCGGTCGAAGAATTGTCTCAGATTCTTAAAAGAGCAGACAACTTTTTGCATTTTGTCCTTCAGAATGCACCTGTTGTTATTGGCCATCAGGATAAAGAGCTGAAGTATCGTTTTATATATAATCATTATCCAAGTCTGCAAGAGGAGGACATTCTAGGAAGAACAGATGTTGAAATTTTTACTGGAGCAGGTGTTAAGGAATCTCAGGCGTTCAAGAAAGAAGTCTTGGAAAAAGGATTACCTGCGAAGCGGGAAATTGAATTTGAGACTGAATTGTTTGGGTTAAAGACGTTCTTGATCTATGTGGAACCTGTCTTCAGCAAGTCAGGGGAGACAATTGGGATAAACTATATGGGAATGGACGTAACCGATCAGGTAAGAAAAAGAGAAAAGATGGTCAAGATTCGTGAAGAGATAGCAGTTCAGAAAGCCAAGGAAACTGAACTAAACAAAACAATTCATATTACAGAGGAGACAATGCGGGCCAAACAGATGCTAGCAACTATGTCTCATGAGATAAGGTCCCCTCTCTCTGGAGTTGTAAGCATGGCTGAGATTCTTGCCACCACAAAACTTGATCAGGAGCAGCGACAGCTGTTGGATGTCATGCTATCTTCAGGAGATTTGGTGCTTCAACTTATAAATGACATCCTTGACCTATCCAAGGTTGAGTCAGGAGTCATGAAGTTAGAAGCTACAAAATTTAGACCAAGAGAGGTCGTAAAGCATGTACTCCAGACAGCTGCTGCATCATTGAAGAAATCTTTAACTTTGGAAGGACGCGTGGCAGATGATGTTCCCACAGAGGTCATTGGGGACGTTCTAAGGATTAGGCAAATTCTCACCAACTTGATCAGCAATGCAATCAAGTTTACCCATCAAGGAAATGTTGGGATTAAACTCTATGTGATACCCGAGCCACCTCGTGGGAAAGAGGAGGGATGCCATCAAAAGTTAACAGCTGATCAATCAGCAATATCAGCAAATGGAATGAAAGAAGAGAATTGTCTACCAACATCTCTACCAAACTATGAACAAAAAGTTTTTCCCAGTCAAATGAATGGGGAGGGTCCTAACCATGATCATTTACCTTCTCTTGAACCTAGAACCCCAATTAAGAGTGACGCTTTAATGAATGGAAATAGGGAGGAGCAACATTATTCACCTGAAACAACTGTGTGGATACGCTGTGATGTACATGACACAGGAATCGGAATTCCTGAAAGTGCATTGCCTACACTTTTTAGAAGATACATGCAAGTTAGTGCTGATCATGCTCGGAAATATGGAGGGACAGGATTAGGACTGGCAATATGCAAACAACTGGTTGAGCTGATGGGTGGTCATCTCACAGTGTCCAGTCAAGAAAAATGCGGATCTACATTTACATTTGTTTTACCTTACAAGGTTTCAACTGCTTGCGATGCTTCCTCTGATGATTCTGGCGAGTTCTCAGATGTGGTGGAGCATGATACTACAAACGATGACACAACTGAGGGCTTTTTCCAGTTCCACCCCCGTAGTTTTGGTTCGCTGTCATCTTCTAATGGATCGAGCAGTACACAAAAGTTACTGTCGCCTAACATTGAGGATAGTGGATCAAGGAATCTCAACGGATCATCTAATTTGTTTCCCTCAAGCAATACCAGATCAAAAGAGACAATTTCTGTTGAAAATGTCTGTTCAGTTGTTGCTGTTGCGGAGATGTTCTCGGAACCAGAAATTTCACAAACTCACAACTCAAATTCTAACAGTCCGAATTCGTTGTGTGGAAGAAATGGATGTGAAAATTACACAAACGGCCATTCGCAAAATGGTGGTATTAATCCCTCTCCTCTCATGGAGACAACAAAAAACGAGGTTGAACTGGAAAAGACAAGCAAACCTCGAGGAGAAACAGTTAAGGGGCAGGTCAAATCTGACGCATGTTCAGAATTACTCAACTCAGCATTGGTACCCAAAATTCTACTTGTGGAGGATAACAAGACGAATATAATGGTGACAGAGTCGATGATGAAGAAGTTAGGCCATAAAATAGATGTCGCTACCACTGGAGTTGAAGCTGTCTGTGCAGTTCAAGGCCGTAGTTATAATCTCATCCTCATGGATGTGAGTATGCCAGTTATGGATGGCCTACAGGCTACGAGGTTAATTCGTTCTTTTGAGGAAACGGGCAATTGGGAGGCGGCGACAATGGCTGGAATTGAGCAAACTCAGAGTTGTCAATCTTCCTTGTCTTCTTCATCTAGCAAGAGGACCCCCATTGTTGCTATGACGGCTAATGCATTGGCAGAGAGTGCAGAAGAGTGTTTTGCAAACGGTATGGATTCGTTCGTGTCAAAGCCTGTAACTTTTCAAAAATTGAAACAGTGCCTAGAACAGTATTTACCGTGA 3021 41.77 MVSEMESDNIEDTEIEVLPSMWPEDIGPDVGKQFNVEKPGQDQDMLEEVTIMEEPTIVDFKRLLELTNYTEKGSSQLQYLAKQWEYKQAEVVRLLKEELDILCEQKREVELKKLEIIEEHQFEEEFAGDKHPISILEEVIDIWQAVPRRKNDVVFQNKRVEIEAEYDTVTYWKQRAMHFEKLLEASLQREHILEEKLQESINNLEKQSLPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELKYRFIYNHYPSLQEEDILGRTDVEIFTGAGVKESQAFKKEVLEKGLPAKREIEFETELFGLKTFLIYVEPVFSKSGETIGINYMGMDVTDQVRKREKMVKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILATTKLDQEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLKKSLTLEGRVADDVPTEVIGDVLRIRQILTNLISNAIKFTHQGNVGIKLYVIPEPPRGKEEGCHQKLTADQSAISANGMKEENCLPTSLPNYEQKVFPSQMNGEGPNHDHLPSLEPRTPIKSDALMNGNREEQHYSPETTVWIRCDVHDTGIGIPESALPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGHLTVSSQEKCGSTFTFVLPYKVSTACDASSDDSGEFSDVVEHDTTNDDTTEGFFQFHPRSFGSLSSSNGSSSTQKLLSPNIEDSGSRNLNGSSNLFPSSNTRSKETISVENVCSVVAVAEMFSEPEISQTHNSNSNSPNSLCGRNGCENYTNGHSQNGGINPSPLMETTKNEVELEKTSKPRGETVKGQVKSDACSELLNSALVPKILLVEDNKTNIMVTESMMKKLGHKIDVATTGVEAVCAVQGRSYNLILMDVSMPVMDGLQATRLIRSFEETGNWEAATMAGIEQTQSCQSSLSSSSSKRTPIVAMTANALAESAEECFANGMDSFVSKPVTFQKLKQCLEQYLP 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12713507 12717642 + Conep04aG0177000.1 Cone4ag1716 436694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1716 1006 Gene3D - 860 1005 - -
Cone4ag1716 1006 Pfam His Kinase A (phospho-acceptor) domain 372 435 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone4ag1716 1006 SMART HisKA_10 370 435 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone4ag1716 1006 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 1005 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Cone4ag1716 1006 CDD HATPase_EvgS-ArcB-TorS-like 486 676 - -
Cone4ag1716 1006 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 602 677 IPR003594 -
Cone4ag1716 1006 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone4ag1716 1006 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone4ag1716 1006 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone4ag1716 1006 ProSiteProfiles Response regulatory domain profile. 863 1005 IPR001789 GO:0000160(InterPro)
Cone4ag1716 1006 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 449 676 IPR036890 -
Cone4ag1716 1006 ProSiteProfiles Histidine kinase domain profile. 377 679 IPR005467 -
Cone4ag1716 1006 Gene3D - 434 683 IPR036890 -
Cone4ag1716 1006 FunFam Histidine kinase 5 212 347 - -
Cone4ag1716 1006 SMART REC_2 862 1001 IPR001789 GO:0000160(InterPro)
Cone4ag1716 1006 Coils Coil 92 112 - -
Cone4ag1716 1006 FunFam Histidine kinase 5 856 1006 - -
Cone4ag1716 1006 SMART HKATPase_4 481 679 IPR003594 -
Cone4ag1716 1006 Pfam Response regulator receiver domain 864 934 IPR001789 GO:0000160(InterPro)
Cone4ag1716 1006 CDD HisKA 369 431 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone4ag1716 1006 Gene3D - 335 433 - -
Cone4ag1716 1006 Coils Coil 187 207 - -
Cone4ag1716 1006 MobiDBLite consensus disorder prediction 721 758 - -
Cone4ag1716 1006 Gene3D PAS domain 205 334 - -
Cone4ag1716 1006 FunFam Putative histidine kinase 5 358 435 - -
Cone4ag1716 1006 SUPERFAMILY CheY-like 862 1005 IPR011006 -
Cone4ag1716 1006 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 435 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone4ag1716 1006 CDD REC_hyHK_CKI1_RcsC-like 864 1001 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1716 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1716 Cone-Chr4:12713507 Cone9ag0376 Cone-Chr9:1690632 5.34E-53 dispersed
Cone4ag1716 Cone-Chr4:12713507 Cone7ag1634 Cone-Chr7:11050862 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0858 . 19 1108 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1384.4
Cone12ag0821 . 1 1107 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1382.5
Cone6ag0342 . 23 1008 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1354.0
Cone9ag0376 . 23 1002 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.6
Cone12ag1329 . 264 1193 Histidine Kinase Gene Family AT2G01830 54.7 4.3e-282 968.4
Cone15ag0619 . 88 1043 Histidine Kinase Gene Family AT2G01830 54.4 2.8e-281 965.7
Cone14ag0613 . 88 1042 Histidine Kinase Gene Family AT2G01830 54.2 6.2e-281 964.5
Cone8ag1386 . 265 1191 Histidine Kinase Gene Family AT2G01830 54.3 9.8e-279 957.2
Cone4ag1716 . 1 1005 Histidine Kinase Gene Family AT5G10720 56.9 1.7e-290 996.1
Cone7ag1634 . 1 1007 Histidine Kinase Gene Family AT5G10720 56.1 1.4e-284 976.5
Cone13ag0806 . 1 1121 Histidine Kinase Gene Family AT1G09570 77.6 0.0e+00 1767.7
Cone19ag0812 . 1 1108 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1748.4
Cone12ag1314 . 21 1122 Histidine Kinase Gene Family AT1G09570 57.3 0.0e+00 1277.3
Cone8ag1368 . 35 1132 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1267.3
Cone14ag0717 . 31 1119 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1177.9
Cone15ag0729 . 31 951 Histidine Kinase Gene Family AT1G09570 56.0 1.7e-305 1046.2
Cone14ag0717 . 5 1060 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1662.5
Cone15ag0729 . 10 966 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1515.7
Cone8ag1368 . 45 1072 Histidine Kinase Gene Family AT2G18790 54.6 0.0e+00 1113.2
Cone12ag1314 . 33 1062 Histidine Kinase Gene Family AT2G18790 55.0 0.0e+00 1112.1
Cone13ag0806 . 20 1056 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1076.6
Cone19ag0812 . 20 1043 Histidine Kinase Gene Family AT2G18790 51.6 7.2e-312 1067.4
Cone12ag1314 . 19 1126 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1410.6
Cone8ag1368 . 29 1136 Histidine Kinase Gene Family AT5G35840 62.9 0.0e+00 1409.0
Cone14ag0717 . 13 1121 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1127.5
Cone13ag0806 . 7 1115 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1106.3
Cone19ag0812 . 7 1102 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1103.2
Cone15ag0729 . 13 951 Histidine Kinase Gene Family AT5G35840 54.3 2.7e-295 1012.3
Cone14ag0717 . 8 1121 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1692.6
Cone15ag0729 . 8 971 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1467.6
Cone12ag1314 . 33 1125 Histidine Kinase Gene Family AT4G16250 53.8 0.0e+00 1151.7
Cone8ag1368 . 45 1135 Histidine Kinase Gene Family AT4G16250 53.5 0.0e+00 1150.6
Cone13ag0806 . 19 1116 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.6
Cone19ag0812 . 19 1103 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1107.4
Cone14ag0717 . 12 1119 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1272.7
Cone15ag0729 . 12 949 Histidine Kinase Gene Family AT4G18130 60.8 0.0e+00 1108.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46045 PF03169 OPT 1.70E-45 No_clan Cone TR