Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1716 ATGGTGTCTGAGATGGAGAGCGATAACATTGAAGACACGGAGATTGAGGTCCTTCCTTCAATGTGGCCTGAAGATATAGGACCTGATGTTGGAAAGCAATTCAATGTTGAAAAGCCAGGACAAGATCAAGATATGCTTGAAGAAGTTACCATAATGGAGGAGCCAACTATAGTTGATTTCAAGCGCCTTTTAGAGCTAACCAACTATACTGAGAAGGGCTCATCTCAATTGCAATATCTTGCGAAACAGTGGGAGTATAAACAGGCAGAAGTCGTTCGCCTTCTCAAAGAAGAACTAGACATTTTATGCGAACAGAAAAGGGAAGTTGAGCTCAAGAAATTGGAAATCATCGAGGAGCATCAGTTTGAGGAAGAGTTTGCCGGTGATAAACATCCGATTTCTATTTTGGAAGAAGTAATTGATATTTGGCAAGCTGTTCCTAGAAGGAAAAATGATGTTGTTTTTCAGAACAAGAGAGTTGAAATAGAAGCTGAGTATGATACTGTGACTTACTGGAAGCAGCGGGCAATGCACTTTGAGAAACTGTTGGAAGCAAGCCTACAAAGAGAGCATATTCTTGAGGAAAAGCTTCAGGAAAGCATAAATAATCTTGAAAAGCAATCCTTGCCGGTCGAAGAATTGTCTCAGATTCTTAAAAGAGCAGACAACTTTTTGCATTTTGTCCTTCAGAATGCACCTGTTGTTATTGGCCATCAGGATAAAGAGCTGAAGTATCGTTTTATATATAATCATTATCCAAGTCTGCAAGAGGAGGACATTCTAGGAAGAACAGATGTTGAAATTTTTACTGGAGCAGGTGTTAAGGAATCTCAGGCGTTCAAGAAAGAAGTCTTGGAAAAAGGATTACCTGCGAAGCGGGAAATTGAATTTGAGACTGAATTGTTTGGGTTAAAGACGTTCTTGATCTATGTGGAACCTGTCTTCAGCAAGTCAGGGGAGACAATTGGGATAAACTATATGGGAATGGACGTAACCGATCAGGTAAGAAAAAGAGAAAAGATGGTCAAGATTCGTGAAGAGATAGCAGTTCAGAAAGCCAAGGAAACTGAACTAAACAAAACAATTCATATTACAGAGGAGACAATGCGGGCCAAACAGATGCTAGCAACTATGTCTCATGAGATAAGGTCCCCTCTCTCTGGAGTTGTAAGCATGGCTGAGATTCTTGCCACCACAAAACTTGATCAGGAGCAGCGACAGCTGTTGGATGTCATGCTATCTTCAGGAGATTTGGTGCTTCAACTTATAAATGACATCCTTGACCTATCCAAGGTTGAGTCAGGAGTCATGAAGTTAGAAGCTACAAAATTTAGACCAAGAGAGGTCGTAAAGCATGTACTCCAGACAGCTGCTGCATCATTGAAGAAATCTTTAACTTTGGAAGGACGCGTGGCAGATGATGTTCCCACAGAGGTCATTGGGGACGTTCTAAGGATTAGGCAAATTCTCACCAACTTGATCAGCAATGCAATCAAGTTTACCCATCAAGGAAATGTTGGGATTAAACTCTATGTGATACCCGAGCCACCTCGTGGGAAAGAGGAGGGATGCCATCAAAAGTTAACAGCTGATCAATCAGCAATATCAGCAAATGGAATGAAAGAAGAGAATTGTCTACCAACATCTCTACCAAACTATGAACAAAAAGTTTTTCCCAGTCAAATGAATGGGGAGGGTCCTAACCATGATCATTTACCTTCTCTTGAACCTAGAACCCCAATTAAGAGTGACGCTTTAATGAATGGAAATAGGGAGGAGCAACATTATTCACCTGAAACAACTGTGTGGATACGCTGTGATGTACATGACACAGGAATCGGAATTCCTGAAAGTGCATTGCCTACACTTTTTAGAAGATACATGCAAGTTAGTGCTGATCATGCTCGGAAATATGGAGGGACAGGATTAGGACTGGCAATATGCAAACAACTGGTTGAGCTGATGGGTGGTCATCTCACAGTGTCCAGTCAAGAAAAATGCGGATCTACATTTACATTTGTTTTACCTTACAAGGTTTCAACTGCTTGCGATGCTTCCTCTGATGATTCTGGCGAGTTCTCAGATGTGGTGGAGCATGATACTACAAACGATGACACAACTGAGGGCTTTTTCCAGTTCCACCCCCGTAGTTTTGGTTCGCTGTCATCTTCTAATGGATCGAGCAGTACACAAAAGTTACTGTCGCCTAACATTGAGGATAGTGGATCAAGGAATCTCAACGGATCATCTAATTTGTTTCCCTCAAGCAATACCAGATCAAAAGAGACAATTTCTGTTGAAAATGTCTGTTCAGTTGTTGCTGTTGCGGAGATGTTCTCGGAACCAGAAATTTCACAAACTCACAACTCAAATTCTAACAGTCCGAATTCGTTGTGTGGAAGAAATGGATGTGAAAATTACACAAACGGCCATTCGCAAAATGGTGGTATTAATCCCTCTCCTCTCATGGAGACAACAAAAAACGAGGTTGAACTGGAAAAGACAAGCAAACCTCGAGGAGAAACAGTTAAGGGGCAGGTCAAATCTGACGCATGTTCAGAATTACTCAACTCAGCATTGGTACCCAAAATTCTACTTGTGGAGGATAACAAGACGAATATAATGGTGACAGAGTCGATGATGAAGAAGTTAGGCCATAAAATAGATGTCGCTACCACTGGAGTTGAAGCTGTCTGTGCAGTTCAAGGCCGTAGTTATAATCTCATCCTCATGGATGTGAGTATGCCAGTTATGGATGGCCTACAGGCTACGAGGTTAATTCGTTCTTTTGAGGAAACGGGCAATTGGGAGGCGGCGACAATGGCTGGAATTGAGCAAACTCAGAGTTGTCAATCTTCCTTGTCTTCTTCATCTAGCAAGAGGACCCCCATTGTTGCTATGACGGCTAATGCATTGGCAGAGAGTGCAGAAGAGTGTTTTGCAAACGGTATGGATTCGTTCGTGTCAAAGCCTGTAACTTTTCAAAAATTGAAACAGTGCCTAGAACAGTATTTACCGTGA 3021 41.77 MVSEMESDNIEDTEIEVLPSMWPEDIGPDVGKQFNVEKPGQDQDMLEEVTIMEEPTIVDFKRLLELTNYTEKGSSQLQYLAKQWEYKQAEVVRLLKEELDILCEQKREVELKKLEIIEEHQFEEEFAGDKHPISILEEVIDIWQAVPRRKNDVVFQNKRVEIEAEYDTVTYWKQRAMHFEKLLEASLQREHILEEKLQESINNLEKQSLPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELKYRFIYNHYPSLQEEDILGRTDVEIFTGAGVKESQAFKKEVLEKGLPAKREIEFETELFGLKTFLIYVEPVFSKSGETIGINYMGMDVTDQVRKREKMVKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILATTKLDQEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLKKSLTLEGRVADDVPTEVIGDVLRIRQILTNLISNAIKFTHQGNVGIKLYVIPEPPRGKEEGCHQKLTADQSAISANGMKEENCLPTSLPNYEQKVFPSQMNGEGPNHDHLPSLEPRTPIKSDALMNGNREEQHYSPETTVWIRCDVHDTGIGIPESALPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGHLTVSSQEKCGSTFTFVLPYKVSTACDASSDDSGEFSDVVEHDTTNDDTTEGFFQFHPRSFGSLSSSNGSSSTQKLLSPNIEDSGSRNLNGSSNLFPSSNTRSKETISVENVCSVVAVAEMFSEPEISQTHNSNSNSPNSLCGRNGCENYTNGHSQNGGINPSPLMETTKNEVELEKTSKPRGETVKGQVKSDACSELLNSALVPKILLVEDNKTNIMVTESMMKKLGHKIDVATTGVEAVCAVQGRSYNLILMDVSMPVMDGLQATRLIRSFEETGNWEAATMAGIEQTQSCQSSLSSSSSKRTPIVAMTANALAESAEECFANGMDSFVSKPVTFQKLKQCLEQYLP 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12713507 12717642 + Conep04aG0177000.1 Cone4ag1716 436694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1716 1006 Gene3D - 860 1005 - -
Cone4ag1716 1006 Pfam His Kinase A (phospho-acceptor) domain 372 435 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone4ag1716 1006 SMART HisKA_10 370 435 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone4ag1716 1006 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 1005 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Cone4ag1716 1006 CDD HATPase_EvgS-ArcB-TorS-like 486 676 - -
Cone4ag1716 1006 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 602 677 IPR003594 -
Cone4ag1716 1006 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone4ag1716 1006 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone4ag1716 1006 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone4ag1716 1006 ProSiteProfiles Response regulatory domain profile. 863 1005 IPR001789 GO:0000160(InterPro)
Cone4ag1716 1006 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 449 676 IPR036890 -
Cone4ag1716 1006 ProSiteProfiles Histidine kinase domain profile. 377 679 IPR005467 -
Cone4ag1716 1006 Gene3D - 434 683 IPR036890 -
Cone4ag1716 1006 FunFam Histidine kinase 5 212 347 - -
Cone4ag1716 1006 SMART REC_2 862 1001 IPR001789 GO:0000160(InterPro)
Cone4ag1716 1006 Coils Coil 92 112 - -
Cone4ag1716 1006 FunFam Histidine kinase 5 856 1006 - -
Cone4ag1716 1006 SMART HKATPase_4 481 679 IPR003594 -
Cone4ag1716 1006 Pfam Response regulator receiver domain 864 934 IPR001789 GO:0000160(InterPro)
Cone4ag1716 1006 CDD HisKA 369 431 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone4ag1716 1006 Gene3D - 335 433 - -
Cone4ag1716 1006 Coils Coil 187 207 - -
Cone4ag1716 1006 MobiDBLite consensus disorder prediction 721 758 - -
Cone4ag1716 1006 Gene3D PAS domain 205 334 - -
Cone4ag1716 1006 FunFam Putative histidine kinase 5 358 435 - -
Cone4ag1716 1006 SUPERFAMILY CheY-like 862 1005 IPR011006 -
Cone4ag1716 1006 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 435 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone4ag1716 1006 CDD REC_hyHK_CKI1_RcsC-like 864 1001 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1716 Cone-Chr4:12713507 Cone9ag0376 Cone-Chr9:1690632 5.34E-53 dispersed
Cone4ag1716 Cone-Chr4:12713507 Cone7ag1634 Cone-Chr7:11050862 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46045 PF03169 OPT 1.70E-45 No_clan Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1716 - - - 0.0