Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1717 ATGAAAACGAGGCGACAGAAATGGACCCAGATTGTGTTTCTTGCCGCCACATTTGTGTGGCTAGCCGTAACGACGAGGAGCTTGCCGGCAGCAACGGCAGAGAGCACAACAATCCAGCCAGTGAATGTGAGCGTGGGAGTGGTTCTTGATTATGACTCGTGGGTTGGGAAGATGGGATTGAGTTGCATTGAAATGGCGATTTCTGATTTCTATGCTTCGCATGCTTCTTACAACACTCGGCTTGTTCCTCACATTAGGGACTCTTACAAAGATGTTGTCGGAGCAGCTGCTGCAGCTTTAGACCTCATGAAGAATGTGCAAGTGCAAGCAATAATAGGCCCACAACAATCAATGCAAGCAAACTTTGTTATCAATCTCGGCCGAAAAGCTCAAGTCCCCATTATATCATTTTCCGCAACAAGTCCGTCCCTTACATCCCTTAGAAGCCCTTATTTTTTCCGCGTAGCACAAAACGATTCATATCAAGTACGAGCCATAAGTGCCATCATTCAGACCTTCGGGTGGAGAGAAGTTGTTCCCATCTATGTAGACAATGAATTCGGTGAGGGAATTGTCCCCTACTTGACAGAAGCATTACAAGACATAGACACGCGGGTCCCTTACCATAGTCGTATCCCTTCATCAGCTTCCGATGATGAAATTGGTTTAGAGCTTTACAATTTGATGGCAATGGAAACCAGAGTCTTTGTTGTTCACATGGATACCAATCTTGCTTCTAAGCTTTTTCTCAAGGCTGAAAAGATTGGAATGATGGAAGAAGGCTATGCTTGGATTGTGACTGATTCGATCATGAATTGCTTGAGTGTTATAGATTCTTCTATTATCGAGGTAATGCAAGGTGTATTGGGCGTAAAGAGTTACGTTCCAAGAACAGTGAAGCTTAACAATTTAACAGATAGATGGAGAGGGAAATTGATACAAGACGATGTTACTATTGGCAACCATGAACTAGAGGTATTAGGTCTTTGGGCTTATGATGCTACTTGGGCACTAGCTATGGCTATTGAGAAGGCTGGGAGTGAAAATTTAGTTTATCAGAATTCAAATGGTTCAAACAAATTAACAGATTTAGAAGCTTTTGGGGTCAATCAAAATGGCGAAAAACTTCGTTCTGCATTAATGGGTATTCAGTTTTCAGGCATGGCTGGAGAGTTTAACCTCATTAACGAGCAACTAGAGTCAACTACATTTGAGATAGGGAATGTGAATGGAAATGGAGGAAGAAATGTTGGATATTGGACGCCTGAAAAAGGATTGACAAATGCGACAGCAATTAGCTCTAATTCTACTTCTAAGGGGAGCTTAGGGACAATTGTGTGGCCGGGAGACACAACCTTCGTTCCCAAGGGATGGGAGATCCCGACAAATAGGAAGATATTGAAAATTGGTGTTCCGGTCCAGAACGGTTTTGCCAAATTTGTGACGGTTACAAAAGATCCCGACACGAAGACAAGCCAAGTCACTGGATACTGCATAGACGTTTTCAAAGCTGTCTTGGAAGAACTGCCTTACTCTGTTAGTTATGAATTCATTCCCTTTGAAGATGCGGAAGGGAATCTGGCTGGTACTTACGATGATTTGATCTACCATGTGCATCTCAAGAAATATGATGCAGTGATTGGAGATGTAACGATTATTGCAAATAGATCTTTGTATGTAGACTTCACTTTTCCATATACAGAATCAGGCGTGTCTATGGTGGTGCCAACTAAGGATTACTCGAGGAAAAATGCATGGGTGTTCTTAAATCCTTTCACTTGGGATCTATGGGTCACAACTGTTTGTTTCTTTATTTATATCGGCTTCATCGTTTGGCTACTTGAACATAGAATAAATGATGATTTCCGTGGGCCCCTTGAGCATCAAATTGGAACAAGTTTATGGTTCTCCTTCTCAACCATGGCGTTTGCACATAGGGAGGCAGTTTTTAACAATTTGGCAAGGTTTGTGGTGATAGTATGGTGCTTTGTGGTGCTTATCCTCACACAAAGTTACACAGCTAGTTTGACCTCGCTGTTGACCGTTCAACAGCTCCAACCGTCAATCAGTGATATTAACTACCTTCTAAAGAATCGGCTGAATGTGGGGTATCTTGAAGGTTCTTTCGTTTATGGGATCTTAAGGTCTTTAAATTTTGAAGATTCTCACCTTATTCATTATAAATCTCCACAAGATATGGACGAACTTTTTTTGAAAGGAAGTGAACATGGTGGTATTTCTGCTGCTTTGGACGAGATTCCTTACATTAGGCTTTTACTTTCAGAATATAACTCCAAATACATAATGGAAGATCCTATATACAAAACTGGTGGATTTGGATTTGTTTTCCCAAAGGGGTCTCCCCTTGTGGGTGACATATCTAGAGCAATCTTAAACGTGACAGAAGGAGATAAGATGACCAATATCGAGGAGACTTGGTTTGGGAACCAATCCAAAGGTCTGCCCTCTAACTCAGAGTTGAGAGCTTTTGGTCTTGAGAGCTTTTGGGGTCTATTTGTTATTACAGGAGTAACTTCAGTGGTTGCTGTGATCATTGCCGGGGCTATGTTCCTTCACAAGGAAGGGCATGTTCTAAAAAACAATGATTCAGAAGCTTCCATTTGGAAAAGAATTCGTGCTGCGGCAAGACATTATGACCAGAAGGATCTTACTTGCCATACTTTCCGAAAGAGCACTACTTATCTTAAGGACAAAAGTGGGCAAGGAAAAGCTATGGATAGTATTAATGGCGCGGCTGTGGTCCCCATTGAGACCTCTCCGAGCACTGAATGTGCTTCTAGTCCATAA 2808 42.02 MKTRRQKWTQIVFLAATFVWLAVTTRSLPAATAESTTIQPVNVSVGVVLDYDSWVGKMGLSCIEMAISDFYASHASYNTRLVPHIRDSYKDVVGAAAAALDLMKNVQVQAIIGPQQSMQANFVINLGRKAQVPIISFSATSPSLTSLRSPYFFRVAQNDSYQVRAISAIIQTFGWREVVPIYVDNEFGEGIVPYLTEALQDIDTRVPYHSRIPSSASDDEIGLELYNLMAMETRVFVVHMDTNLASKLFLKAEKIGMMEEGYAWIVTDSIMNCLSVIDSSIIEVMQGVLGVKSYVPRTVKLNNLTDRWRGKLIQDDVTIGNHELEVLGLWAYDATWALAMAIEKAGSENLVYQNSNGSNKLTDLEAFGVNQNGEKLRSALMGIQFSGMAGEFNLINEQLESTTFEIGNVNGNGGRNVGYWTPEKGLTNATAISSNSTSKGSLGTIVWPGDTTFVPKGWEIPTNRKILKIGVPVQNGFAKFVTVTKDPDTKTSQVTGYCIDVFKAVLEELPYSVSYEFIPFEDAEGNLAGTYDDLIYHVHLKKYDAVIGDVTIIANRSLYVDFTFPYTESGVSMVVPTKDYSRKNAWVFLNPFTWDLWVTTVCFFIYIGFIVWLLEHRINDDFRGPLEHQIGTSLWFSFSTMAFAHREAVFNNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPSISDINYLLKNRLNVGYLEGSFVYGILRSLNFEDSHLIHYKSPQDMDELFLKGSEHGGISAALDEIPYIRLLLSEYNSKYIMEDPIYKTGGFGFVFPKGSPLVGDISRAILNVTEGDKMTNIEETWFGNQSKGLPSNSELRAFGLESFWGLFVITGVTSVVAVIIAGAMFLHKEGHVLKNNDSEASIWKRIRAAARHYDQKDLTCHTFRKSTTYLKDKSGQGKAMDSINGAAVVPIETSPSTECASSP 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12718045 12721784 - Conep04aG0177100.1 Cone4ag1717 436695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1717 935 FunFam Glutamate receptor 158 311 - -
Cone4ag1717 935 CDD GluR_Plant 465 814 - -
Cone4ag1717 935 FunFam Glutamate receptor 585 715 - -
Cone4ag1717 935 Pfam Receptor family ligand binding region 62 412 IPR001828 -
Cone4ag1717 935 SUPERFAMILY Periplasmic binding protein-like II 442 816 - -
Cone4ag1717 935 Gene3D - 761 823 - -
Cone4ag1717 935 PIRSF IGluLR_plant 8 925 IPR017103 -
Cone4ag1717 935 PRINTS Metabotropic glutamate GPCR signature 162 178 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Cone4ag1717 935 PRINTS Metabotropic glutamate GPCR signature 111 137 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Cone4ag1717 935 PRINTS Metabotropic glutamate GPCR signature 143 162 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Cone4ag1717 935 Gene3D - 165 316 - -
Cone4ag1717 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 876 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone4ag1717 935 FunFam Glutamate receptor 466 585 - -
Cone4ag1717 935 Gene3D - 466 584 - -
Cone4ag1717 935 CDD PBP1_GABAb_receptor_plant 44 428 IPR044440 -
Cone4ag1717 935 Gene3D - 370 465 - -
Cone4ag1717 935 SUPERFAMILY Periplasmic binding protein-like I 42 449 IPR028082 -
Cone4ag1717 935 Gene3D - 66 164 - -
Cone4ag1717 935 SMART GluR_14 468 816 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone4ag1717 935 Pfam Ligand-gated ion channel 816 844 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone4ag1717 935 Gene3D - 585 715 - -
Cone4ag1717 935 Pfam Bacterial extracellular solute-binding proteins, family 3 490 592 IPR001638 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1006 Cone-Chr10:6929086 Cone4ag1717 Cone-Chr4:12718045 6.68E-126 dispersed
Cone4ag1717 Cone-Chr4:12718045 Cone4ag1719 Cone-Chr4:12739500 0 dispersed
Cone4ag1717 Cone-Chr4:12718045 Cone4ag1718 Cone-Chr4:12733455 0 tandem
Cone17ag0960 Cone-Chr17:7475325 Cone4ag1717 Cone-Chr4:12718045 2.97e-313 wgd
Cone20ag0303 Cone-Chr20:1349219 Cone4ag1717 Cone-Chr4:12718045 0 wgd
Cone4ag1717 Cone-Chr4:12718045 Cone7ag1635 Cone-Chr7:11055723 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1717 K05387 - mdm:103449079 1027.31