Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1718 ATGGCGAAGAAGAACCCATTAATCCTTCTCTCTCTCTTCATATCATTTTCTGTTTCTCTGACAAACACAGTCCCAGTGAAGGTGGGAGTGGTTTTAAGTTTGGAGACGTGGATGGGGACGATGGGTTGGAACTGTACTGAGATGGCTCTCTCTGACTTCTATGCTTCTCATTCTCATTACAAGACCAGGATTGTTCCCACCTTTAGGGACTCTAAAAACGATGTCATTGGAGCAGCTGCAGCAGCTCTGTACCTTATAAAAAACGTCCAAGTTGAAGCTATAATCGGCCCACAAAGCTCCATGCAAGCAGACTTTGTTATCGATCTGGGCACCAAAGCCCAAGTGCCCATCATTTCATTCTCCGCAACAAGCTCGTCCCTTACATCCCTCCGAAGTCCATATTTTTTCCGAGCAGCCCAAAACGATTCATCTCAAGTCAAAGCCATAAGCACTATAGTCAAAGCATTTGGTTGGAGAGAAGTTGTGCCCATCTACGTAGACAATGAATTCGGGGAGGGAATCATTCCCTACTTGACAGATGCATTGGAAGATGTAAACACTCGGGTTCCAATCCGCATTCTCATCCCTCCCTCAGCTTCTGATGATCAAATTGGCGAAGAGCTTTCCAAGCTAATGAACATGCGAGCTCGAGTCTTTATTGTTCACATGTACCCTAATCTTGCTTCTAAACTTTTCACCAAGGCCAAAGAGATTGGAATGATGGAAATGGGTTATGCTTGGATTATTACAAATTCAATAGGTGACTACATTTCTTCATTGAATACTTCAGTCCTTAATGCAATGCGAGGGGTAATAGGCATAAAGACATATGTTCCGGAATCAGCAAGGCTTCACAAGTTAAAAGCGCAATGGAGAAGGAGTTGGAATCAGAAACAGACAACCTTTGACAAACCGGAACTGGATATAGTAGGCCTATGGGCTTATGATGCTGCTTGGGCGCTAGCCTTGGCGGTTGAAAAGGCTGGACCAACAAACTTGGGTTATCATACAAACCAGTCCTTAACTAACTTAACGGATTTAGAAACTTTTGGGGTCAATAAAAATGGTGAGGAACTTTCTGATGAATTGTTGAAAACTAAATTCGAAGGGGTGGCTGGAGAATTTGTTTTTGTTAATCGACAATTGAAATCGACGAATTTTCAGATATTGAATGTGATTGATAAAAGAGTGAAAGAGATTGGATATTGGACACCTGAAGCAGGATTAACAAAAGAGTTGAATACAAAAAGAAGTAGTGCTCACTATTCTGCTTCTAATGCAAGTTTAGGTGCAATAATATGGCCAGGAGACACAACAGGGATTCCTAAAGGATGGGAGATTCCGACAAATGGGAAATTTTTGCGAATTGGGGTTCCGGTGAAAGAAGGTTTCACTGAATTTCTTTCAGTCACTTATGATAACATTACTAACATAACGACGCTGAAGGGTGGATATTGCAAAGACGTGTTCGAAGCAGTTTTGAATGCATTACCTTACGTTGTTAGCCACGAATACATTCCCTTTGCAAAGCCAAACGGAGAAATGGCCGGTACTTACAATGATTTGGTCTATCAAGTTTATCTCGGGAACTTTGATGCAGTTGTCGGGGATGTGACAATCATAGCAAATAGATCTTTGTACATTGATTATACTTTGCCATATACGGAGTCGGGTGTATCTATGGTAGTGCCAATTAAAGGTGCCTCAGGGAAGAAATCACTGGCGTTTTTGAAGCCTTTAACCTGGGATCTTTGGCTGACAAGTGCTTTATTCTTTGTTTTCATCGGGATCATCGTGTGGTTTCTCGAACATCGAGTAAACGAGGAATTCAGAAAAGGCCCACTTTTACATCAGATTGCAACGAGCCAATGGTTCTCTTTCTCGACTATGTTTTTTGCTCAAAGGGAGAAAGTGGCCAGTAACTTGGCGAGAATTGTAGTGATAGTGTGGTGTTTCGTTGTTCTTATCCTAATTCAAAGTTACACAGCAAGTTTGACTTCACTCTTGACAATAGAACAACTCCAACCAACTATTACTGATGCGAATCAACTCTTAAAGAGCCGCGCAAGAGTAGGGTACCAAAAGGGTTCTTTCGTCTACAATATGTTAAGATCATTGAAATTTGAGGACTCTAATCTCGTAAACTACTCCTCTTCTGAGGAGATGCATCAACTTTTCAAAAAAGGAAGTGGTAATGGTGGTATTGCTGCTGCTTATGATGAAATTCCTTTCATCAAGGTGTTTCTTTCCAATCATTGTTCTGAATATACCATGCAAGATCCGACGTATAGAACTGATGGACTCGGATTCGTTTTTCCAATCGGTTCGCCAATTGTGTCCGACATTTCGAGGGCGATTTTAAAGGTGACAGAGGGAGAAGAAATGGACAGAATAAATCAGCGTTGGTTTGGGAAACAATTTGATTGTTCAAGCTCTAGTATAGGGGTTACATCTACTAGTCTTAGTCTTCATAGTTTCTGGGTTTTGTTCGTCATTTCTGGGGGTACTGCAATATTGGCTTTGTTCATATTTTTTTGTATTTTTGTAAGAAAGGAGAAAAATTCGATCGACGAAGACGTTCACTCGAAAACCAACATACAAGATAAAATTATGGAGCTGTTGAAACTGTATGACAAAAAGGATGAAACATTCCACACTTGGGCAGAAAATGGTGTACGTGTATCAGATCGGGAGAGTGGCAACTCTGATGATGCTAATATTCCTCCGGTCGATGTGGAACCTTCAGCTGAGGCCGTTGAGTTTTCCGGGCCGGTTAGTCCACCCACAAATTGGACGACTGATAGCGATGGTTTGATGAGCATGGATAATAACGTTGGAGGTAGGTCGCCGGTGAATGAGATTGAACTTGTGCAATAA 2877 41.54 MAKKNPLILLSLFISFSVSLTNTVPVKVGVVLSLETWMGTMGWNCTEMALSDFYASHSHYKTRIVPTFRDSKNDVIGAAAAALYLIKNVQVEAIIGPQSSMQADFVIDLGTKAQVPIISFSATSSSLTSLRSPYFFRAAQNDSSQVKAISTIVKAFGWREVVPIYVDNEFGEGIIPYLTDALEDVNTRVPIRILIPPSASDDQIGEELSKLMNMRARVFIVHMYPNLASKLFTKAKEIGMMEMGYAWIITNSIGDYISSLNTSVLNAMRGVIGIKTYVPESARLHKLKAQWRRSWNQKQTTFDKPELDIVGLWAYDAAWALALAVEKAGPTNLGYHTNQSLTNLTDLETFGVNKNGEELSDELLKTKFEGVAGEFVFVNRQLKSTNFQILNVIDKRVKEIGYWTPEAGLTKELNTKRSSAHYSASNASLGAIIWPGDTTGIPKGWEIPTNGKFLRIGVPVKEGFTEFLSVTYDNITNITTLKGGYCKDVFEAVLNALPYVVSHEYIPFAKPNGEMAGTYNDLVYQVYLGNFDAVVGDVTIIANRSLYIDYTLPYTESGVSMVVPIKGASGKKSLAFLKPLTWDLWLTSALFFVFIGIIVWFLEHRVNEEFRKGPLLHQIATSQWFSFSTMFFAQREKVASNLARIVVIVWCFVVLILIQSYTASLTSLLTIEQLQPTITDANQLLKSRARVGYQKGSFVYNMLRSLKFEDSNLVNYSSSEEMHQLFKKGSGNGGIAAAYDEIPFIKVFLSNHCSEYTMQDPTYRTDGLGFVFPIGSPIVSDISRAILKVTEGEEMDRINQRWFGKQFDCSSSSIGVTSTSLSLHSFWVLFVISGGTAILALFIFFCIFVRKEKNSIDEDVHSKTNIQDKIMELLKLYDKKDETFHTWAENGVRVSDRESGNSDDANIPPVDVEPSAEAVEFSGPVSPPTNWTTDSDGLMSMDNNVGGRSPVNEIELVQ 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12733455 12736979 + Conep04aG0177200.1 Cone4ag1718 436696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1718 958 SMART GluR_14 455 805 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone4ag1718 958 FunFam Glutamate receptor 573 704 - -
Cone4ag1718 958 Gene3D - 576 708 - -
Cone4ag1718 958 MobiDBLite consensus disorder prediction 925 947 - -
Cone4ag1718 958 FunFam Glutamate receptor 145 305 - -
Cone4ag1718 958 CDD GluR_Plant 452 803 - -
Cone4ag1718 958 Gene3D - 143 308 - -
Cone4ag1718 958 FunFam Glutamate receptor 453 573 - -
Cone4ag1718 958 Gene3D - 752 811 - -
Cone4ag1718 958 FunFam Glutamate receptor 2.7 711 811 - -
Cone4ag1718 958 MobiDBLite consensus disorder prediction 917 958 - -
Cone4ag1718 958 Pfam Receptor family ligand binding region 46 393 IPR001828 -
Cone4ag1718 958 Gene3D - 453 575 - -
Cone4ag1718 958 SUPERFAMILY Periplasmic binding protein-like II 428 805 - -
Cone4ag1718 958 CDD PBP1_GABAb_receptor_plant 27 413 IPR044440 -
Cone4ag1718 958 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 869 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone4ag1718 958 Gene3D - 349 452 - -
Cone4ag1718 958 PIRSF IGluLR_plant 1 917 IPR017103 -
Cone4ag1718 958 Pfam Ligand-gated ion channel 581 835 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone4ag1718 958 SUPERFAMILY Periplasmic binding protein-like I 25 436 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1718 Cone-Chr4:12733455 Cone7ag1638 Cone-Chr7:11071332 0 dispersed
Cone4ag1717 Cone-Chr4:12718045 Cone4ag1718 Cone-Chr4:12733455 0 tandem
Cone4ag1718 Cone-Chr4:12733455 Cone4ag1719 Cone-Chr4:12739500 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1718 K05387 - rcu:8265217 989.178