Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1720 ATGTCGATGAACATGATGTTGATGAGGATGAACAAATACTACGCAAAATATTGTCTCTACTTCTTTGCAGTTGTCTTAAGCTGGGTCTTCTTGGCTACCGCAGCGCAGAACACAACCAGTACTGGAGTAAATATCGGCGTGGTTCTTGATTTGAACACATGGGCTGGAAAAATGGAGTTGACTTCTATTCGCGTAGCTCTCTCAGATTTCTATGATTCGCATCCTCACTACAAAACTAGGCTCGTTCTCAACCCAAGAGATTCTCGGGAAGATGTTGTTCAAGCAGCTGCTTCAGCTCTAGATTTGATCAAGAATGTGGAGGTACAAGCCATAATAGGGCCAGAAGATTCTATGCAGGCCACCTTCCTAATCGATCTAGGAAACAAATCTAAAGTCCCCATCGTATCATTTTCCGCAACCCGCCCTATGCTCACCTCCCATAGAAATCCATACTTCTTTAGAGCCGCAACAAACGACTCCGCTCAAGTAAAAACCATAAGCGCAATCGTTAAAACTTTCGCATGGAGACAAGTAGTTCCAATTTATGTAGACGACGAATTTGGAGAGGGGCTCATACCTTACTTAACCGATGCTTTGGAAGAAGTCGATGCTCGTGTGCCCTACCGGAGTGTTATATCTCCGAAAATAACAGACGACCAAATTGCTGAGGAGCTTTACTTGTTGATGACAATGCAAACTAGGGTTTTCGTGGTACATATGTCTCCAAGTCTTGGATCTAGGCTTTTTACCAAGGCTAATGAGATAGGAATGATGAGCAAAGGGTATGTTTGGATCATGACGGATGGTATTACTAATGATTTGAATTTCATTCAGCCATCCGTTTATGATTCGATGCAAGGGGTACTTGGCGTAAGGACTTACGTTCCAAGATCAAAGATTCTAGACGAATTCAAGGTCCGCTGGTCGAGAAAATTTCGAAAAGAGTATCCAAAGATAGACAACCCTCAACTGGATGTCTTTTGCTTATGGGCTTATGATGCTACTTGGGCACTAGCATTGGCTGTTGAGAAGGCTGGGATTGAGAATTTCAGGTATGTCATTACTCCAAATGCATCGAGCATTAATAACTCTTCAACAGATTTAGATTTCTTAAATGGGATTAATAATCAAAATGGTCCAAAGCTTGTTGATGCTCTGTCAAATGTCACATTTAAAGGCGTTGCAGGAGATCATTTTAGTCTTATCGATGGACAATTACAATCGTCAACTTTCCAAGTTGTAAATATCAACGGGCAAGGAGGAAGAGTCATTGGGTATTGGACCCCAAAAACTAGTCTCGTAAAAAAATTAACAAATTCTACACATTACACTAGCACAGAATCGATTTCTAGAGGTAAACTAAGTAGTATTATATGGCCTGGAGATTCGACATCGGCTCCAAAGGGATGGGAAATTCCGACGAATGGGAAGAAGTTGAAAATTGGAGTACCGGTCAAGGACGGGTTTAGCGAATTTGTTAAGGTGACTCATGATCATGCGACAAATATGGTAAAAGTTACCGGATATTGCATAGATGTGTTTGCCGCCGTAATCGAAGCCCTACCTTACGATATCACTTATGATTTAATTCCTTTTGCAAATGCTAGCGGTGACGCAGCCGGTAACTACAACGACTTGACCTATCAAGTTTACTTGGGGAACTTTGATGGTGTGGTAGGGGACACGGCGATTCTAGCAAACAGGTCACAATATGTCGATTTCGCGTTGCCGTATACAAAATCAGGAGTATCCATGATCGTTCCGTTGAGAAGTAACAAAAAGGAAAATGCATGGGTGTTCTTATGGCCGTTGACTTGGGATCTATGGATGACAATCGGTCTCTTTTTCATCTTCACCGGTTTTGCAGTTTGGATTCTTGAATACCGAGACAACCCGCAGTTCCAGGGCTCTTGGAGGCACCAGGTCGGAACAAGTTTAGGGTACTCTTTCTCAACTATGGTTTTTGCACATCGAGAGGCAACTATCAACAACTGGGCACGGCTGGTTGTGATCGTATGGGTTTTCGTAGTACTGATTTTGACTCAAAGTTACACGGCTAGTTTGGCCTCGCTCTTAACCGTTCAACAGCTACAACCAACTGTTACCGATGTGAATCAACTCCTCAAGAATGGGGAGAATGTTGGGTACCAGGAAGGTTCTTTTGTCTTTGACATCTTAAGATCTTTAAAATTTAATGAATCCAAACTCATTACTTATGGAAGCCCTGAAGAGTTGCACGACCTTTTCCAAAGCGGCAGTTCAAAAGGTGGCATCTCGGCCGCTCTTGACGAAAGCCCTTACGTCGATCTTTTTCTTTCGGAATACTGCTCCAAGTACACCACCACTAAAGACCCTGAATACAAAATTGGTGGTTTTGGATTCGCATTTCCAAAGGGGTCTCCTATTGTGCCTGATATATCAAGAGCGGTTTTGAATGTGATCGAAAGTGAAAAGATGAAGGGAATTGAAAGCGCATGGTTTAAGAGAAAAGCAAGTTGTTTAGTGTCAGATTTACAGCCTGAATCTACCAGTCTAAGCTTCAAAAGCTTTTGGGGGTTATTCCTCGTGACAGGGACTTGTTCCTTAGCGGCCATAATTGCACACGTGGCTGCATTTCTGCACAGAGAAAGGGAAGCATTATGGGGCAAAGACGCGGATGTCCGAATATCGATATGGAAAAGGATCCGAAAGAAATGGATCATAGTACAAGCTTCAGAGCCGAGGGGTGTAGCTTCTACAAACGGCGACCCTGGAAATTCCCGCGTTCATGAACAGCAAAAAACAACTCGTAGAGCACGAAGTGCTGTGTTAGTCTAG 2817 42.99 MSMNMMLMRMNKYYAKYCLYFFAVVLSWVFLATAAQNTTSTGVNIGVVLDLNTWAGKMELTSIRVALSDFYDSHPHYKTRLVLNPRDSREDVVQAAASALDLIKNVEVQAIIGPEDSMQATFLIDLGNKSKVPIVSFSATRPMLTSHRNPYFFRAATNDSAQVKTISAIVKTFAWRQVVPIYVDDEFGEGLIPYLTDALEEVDARVPYRSVISPKITDDQIAEELYLLMTMQTRVFVVHMSPSLGSRLFTKANEIGMMSKGYVWIMTDGITNDLNFIQPSVYDSMQGVLGVRTYVPRSKILDEFKVRWSRKFRKEYPKIDNPQLDVFCLWAYDATWALALAVEKAGIENFRYVITPNASSINNSSTDLDFLNGINNQNGPKLVDALSNVTFKGVAGDHFSLIDGQLQSSTFQVVNINGQGGRVIGYWTPKTSLVKKLTNSTHYTSTESISRGKLSSIIWPGDSTSAPKGWEIPTNGKKLKIGVPVKDGFSEFVKVTHDHATNMVKVTGYCIDVFAAVIEALPYDITYDLIPFANASGDAAGNYNDLTYQVYLGNFDGVVGDTAILANRSQYVDFALPYTKSGVSMIVPLRSNKKENAWVFLWPLTWDLWMTIGLFFIFTGFAVWILEYRDNPQFQGSWRHQVGTSLGYSFSTMVFAHREATINNWARLVVIVWVFVVLILTQSYTASLASLLTVQQLQPTVTDVNQLLKNGENVGYQEGSFVFDILRSLKFNESKLITYGSPEELHDLFQSGSSKGGISAALDESPYVDLFLSEYCSKYTTTKDPEYKIGGFGFAFPKGSPIVPDISRAVLNVIESEKMKGIESAWFKRKASCLVSDLQPESTSLSFKSFWGLFLVTGTCSLAAIIAHVAAFLHREREALWGKDADVRISIWKRIRKKWIIVQASEPRGVASTNGDPGNSRVHEQQKTTRRARSAVLV 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12748458 12751661 - Conep04aG0177400.1 Cone4ag1720 436698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1720 938 Pfam Ligand-gated ion channel 605 858 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone4ag1720 938 CDD PBP1_GABAb_receptor_plant 44 437 IPR044440 -
Cone4ag1720 938 Gene3D - 313 477 - -
Cone4ag1720 938 Pfam Receptor family ligand binding region 60 418 IPR001828 -
Cone4ag1720 938 Gene3D - 478 595 - -
Cone4ag1720 938 SMART GluR_14 478 829 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone4ag1720 938 MobiDBLite consensus disorder prediction 909 930 - -
Cone4ag1720 938 FunFam Glutamate receptor 478 597 - -
Cone4ag1720 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 919 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone4ag1720 938 Gene3D - 768 835 - -
Cone4ag1720 938 Gene3D - 596 728 - -
Cone4ag1720 938 FunFam Glutamate receptor 375 477 - -
Cone4ag1720 938 FunFam Glutamate receptor 597 727 - -
Cone4ag1720 938 CDD GluR_Plant 477 827 - -
Cone4ag1720 938 PIRSF IGluLR_plant 12 936 IPR017103 -
Cone4ag1720 938 SUPERFAMILY Periplasmic binding protein-like II 456 829 - -
Cone4ag1720 938 Gene3D - 158 312 - -
Cone4ag1720 938 FunFam Glutamate receptor 164 322 - -
Cone4ag1720 938 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0960 Cone-Chr17:7475325 Cone4ag1720 Cone-Chr4:12748458 1.84E-307 dispersed
Cone20ag0303 Cone-Chr20:1349219 Cone4ag1720 Cone-Chr4:12748458 0 dispersed
Cone4ag1720 Cone-Chr4:12748458 Cone7ag1640 Cone-Chr7:11081929 0 dispersed
Cone4ag1719 Cone-Chr4:12739500 Cone4ag1720 Cone-Chr4:12748458 3.44e-319 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1720 K05387 - mdm:139187527 1014.99