Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1724 ATGGCATCCAAGCTGTGTGACTCCTGCAAAACGACGACGGCCACTCTGTTCTGCCGCGCCGACTCGGCTTTTCTCTGCGTAGGATGTGACTCAAAGGTCCACGCGGCCAACAAGCTCGCGTCTCGACACGCGCGCGTTTGGGTCTGTGAGGTCTGCGAGCAAGCTCCGGCTCAGGTCATGTGCAAGGCAGATGCCGCCGTTCTCTGCGCTGCCTGCGACCGTGACATCCATTCGGTCAATCCTCTCGCTCGCCGTCACGAGCGCGTTCCCGTGACTCCTTTCTATGACACCGCTGTTAAATCCGGTGCCACCGGTAACTCATTTGAAGGTCGTTGCTTCTCCGATGTCGATAAGGAAGCTGATCTCAGCAGGGATGAGGCAGAGGCTGCTTCCTGGCTGCTCCCGAACCCTAATTCCAAGGCAATTGAGAGTCCAGACCTGAATTCTGGTAGGTTCGTTTTTCCAGAAATGGATACGTATCTTAATCTTGATTACGGATCTGTTGATCTGAAAACGGAAGCAGAGGAACAGAGCAGCCCAGGCGCCGATAGAGTGGTACCGGTAGAGAGAAGCTGCTTACATCCATCCATGGAAAACGGGAGCTACTTCGACATAGATTTTACCGAGGCCGAATCCTTTTCTTACGGTTACAACACACACTCCGCGAACCAGAGCTTATCTTCCTCGTCTATGGAGGTTGCGGTGGTACCAGACGGTAGCGTCATGAACGATATATCAAATCCATACGCAAAACCTGCAGCAGAGCGGACAACATATCAGGCGGTGCAAATTTCAGCAGCGGATCGGGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAATCGCAAGTTTGAGAAGACGATCCGCTACGCCTCAAGAAAAGCTTACGCTGAGACGAGACCTCGCGTCAAAGGAAGGTTCGCTAAAAGAACAGATGAAGTCTGGGAATACAGCGTCGTTCCGACGTTTTGA 975 52.82 MASKLCDSCKTTTATLFCRADSAFLCVGCDSKVHAANKLASRHARVWVCEVCEQAPAQVMCKADAAVLCAACDRDIHSVNPLARRHERVPVTPFYDTAVKSGATGNSFEGRCFSDVDKEADLSRDEAEAASWLLPNPNSKAIESPDLNSGRFVFPEMDTYLNLDYGSVDLKTEAEEQSSPGADRVVPVERSCLHPSMENGSYFDIDFTEAESFSYGYNTHSANQSLSSSSMEVAVVPDGSVMNDISNPYAKPAAERTTYQAVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRVKGRFAKRTDEVWEYSVVPTF 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12765271 12766606 + Conep04aG0177800.1 Cone4ag1724 436702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1724 324 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 317 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cone4ag1724 324 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 CDD Bbox1_BBX-like 48 91 IPR049808 -
Cone4ag1724 324 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 CDD Bbox1_BBX-like 5 48 IPR049808 -
Cone4ag1724 324 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 Pfam CCT motif 269 311 IPR010402 GO:0005515(InterPro)
Cone4ag1724 324 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 ProSiteProfiles CCT domain profile. 269 311 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1724 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1724 Cone-Chr4:12765271 Cone8ag1358 Cone-Chr8:10874011 8.48E-09 dispersed
Cone4ag1724 Cone-Chr4:12765271 Cone7ag1644 Cone-Chr7:11095778 9.42E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag0338 . 10 383 C2C2-CO-like Transcription Factor Family AT5G15850 51.8 5.1e-54 209.1
Cone11ag0338 . 1 383 C2C2-CO-like Transcription Factor Family AT3G02380 52.7 1.9e-61 233.8
Cone7ag1644 . 1 323 C2C2-CO-like Transcription Factor Family AT5G24930 55.9 3.1e-67 253.1
Cone4ag1724 . 1 321 C2C2-CO-like Transcription Factor Family AT5G24930 57.1 7.7e-66 248.4
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 57.5 1.2e-93 340.9
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 1.6e-90 330.5
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone3ag1218 . 1 213 C2C2-CO-like Transcription Factor Family AT1G75540 50.5 3.3e-47 186.4
Cone6ag1668 . 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 64.4 7.0e-57 217.6
Cone9ag1590 . 10 187 C2C2-CO-like Transcription Factor Family AT2G21320 63.5 9.4e-54 207.2
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT2G21320 77.5 5.9e-40 161.4
Cone6ag1668 . 1 175 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 1.1e-55 213.8
Cone9ag1590 . 10 185 C2C2-CO-like Transcription Factor Family AT4G38960 63.1 2.4e-55 212.6
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT4G38960 76.5 1.3e-40 163.7
Cone3ag1218 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 8.3e-48 188.0
Cone10ag1103 . 1 118 C2C2-CO-like Transcription Factor Family AT4G39070 76.3 1.1e-47 187.6
Cone4ag1948 . 1 195 C2C2-CO-like Transcription Factor Family AT4G39070 51.7 1.2e-46 184.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46046 PF04000 Sas10_Utp3 1.60E-14 No_clan Cone TF