Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1724 ATGGCATCCAAGCTGTGTGACTCCTGCAAAACGACGACGGCCACTCTGTTCTGCCGCGCCGACTCGGCTTTTCTCTGCGTAGGATGTGACTCAAAGGTCCACGCGGCCAACAAGCTCGCGTCTCGACACGCGCGCGTTTGGGTCTGTGAGGTCTGCGAGCAAGCTCCGGCTCAGGTCATGTGCAAGGCAGATGCCGCCGTTCTCTGCGCTGCCTGCGACCGTGACATCCATTCGGTCAATCCTCTCGCTCGCCGTCACGAGCGCGTTCCCGTGACTCCTTTCTATGACACCGCTGTTAAATCCGGTGCCACCGGTAACTCATTTGAAGGTCGTTGCTTCTCCGATGTCGATAAGGAAGCTGATCTCAGCAGGGATGAGGCAGAGGCTGCTTCCTGGCTGCTCCCGAACCCTAATTCCAAGGCAATTGAGAGTCCAGACCTGAATTCTGGTAGGTTCGTTTTTCCAGAAATGGATACGTATCTTAATCTTGATTACGGATCTGTTGATCTGAAAACGGAAGCAGAGGAACAGAGCAGCCCAGGCGCCGATAGAGTGGTACCGGTAGAGAGAAGCTGCTTACATCCATCCATGGAAAACGGGAGCTACTTCGACATAGATTTTACCGAGGCCGAATCCTTTTCTTACGGTTACAACACACACTCCGCGAACCAGAGCTTATCTTCCTCGTCTATGGAGGTTGCGGTGGTACCAGACGGTAGCGTCATGAACGATATATCAAATCCATACGCAAAACCTGCAGCAGAGCGGACAACATATCAGGCGGTGCAAATTTCAGCAGCGGATCGGGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAATCGCAAGTTTGAGAAGACGATCCGCTACGCCTCAAGAAAAGCTTACGCTGAGACGAGACCTCGCGTCAAAGGAAGGTTCGCTAAAAGAACAGATGAAGTCTGGGAATACAGCGTCGTTCCGACGTTTTGA 975 52.82 MASKLCDSCKTTTATLFCRADSAFLCVGCDSKVHAANKLASRHARVWVCEVCEQAPAQVMCKADAAVLCAACDRDIHSVNPLARRHERVPVTPFYDTAVKSGATGNSFEGRCFSDVDKEADLSRDEAEAASWLLPNPNSKAIESPDLNSGRFVFPEMDTYLNLDYGSVDLKTEAEEQSSPGADRVVPVERSCLHPSMENGSYFDIDFTEAESFSYGYNTHSANQSLSSSSMEVAVVPDGSVMNDISNPYAKPAAERTTYQAVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRVKGRFAKRTDEVWEYSVVPTF 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12765271 12766606 + Conep04aG0177800.1 Cone4ag1724 436702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1724 324 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 317 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cone4ag1724 324 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 CDD Bbox1_BBX-like 48 91 IPR049808 -
Cone4ag1724 324 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 CDD Bbox1_BBX-like 5 48 IPR049808 -
Cone4ag1724 324 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 Pfam CCT motif 269 311 IPR010402 GO:0005515(InterPro)
Cone4ag1724 324 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Cone4ag1724 324 ProSiteProfiles CCT domain profile. 269 311 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1724 Cone-Chr4:12765271 Cone8ag1358 Cone-Chr8:10874011 8.48E-09 dispersed
Cone4ag1724 Cone-Chr4:12765271 Cone7ag1644 Cone-Chr7:11095778 9.42E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46046 PF04000 Sas10_Utp3 1.60E-14 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1724 - - - 0.0