Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1725 ATGGGCTATCTGAATCCGGTATTGTCATGTTCAAGCCAGGTTCATGCTGCTGAGGACGTACCTGTAAGCGGCGGTGGCCTCAGTCAAAATGGGAAGTTCAGCTATGGATATGCTAGCTCTCCTGGGAAAAGGTCGTCAATGGAAGATTTCTACGAGACACGAATTGATGGCGTGGATGGCGAAATAGTTGGTCTCTTTGGGGTTTTTGATGGTCATGGGGGTGCACGGGCTGCTGAGTATGTCAAGCAAAACCTTTTCAGTAATCTGATCAGCCATCCAAAATTCATTTCTGATACCAAGTCAGCAATAGCTGATGCATACAACCACACAGACTCTGAATTTCTGAAATCGGAAAACAATCAAAACCGTGATGCGGGATCAACCGCTTCCACTGCCATCCTTGTTGGTGATCGTTTACTGGTTGCAAATGTTGGAGATTCAAGGGCTGTTATATGCCGAGGTGGCAATGCCATTGCTGTTTCTCGAGATCACAAGCCAGACCAAACTGATGAGCGACAAAGGATAGAGGAAGCAGGAGGATTTGTGATGTGGGCTGGTACGTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCTTTTGGTGATAGGTTGTTGAAGCAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTTGACAGTTCTCTGGAGTTCCTTATACTTGCAAGTGATGGACTTTGGGATGTTGTCTCTAACGAGGAGGCCGTTTTGATGATCAAACCAATCCAAGATCCAGAAGAAGCTGCAAGGAGGCTTATGCAAGAAGCATATCAGAGAGGCAGTGCGGATAATATAACCTGTGTCGTGGTCCGTTTCTTGGCCAATCAAGGGGGTCCCTCACATGGCAGTTCTGGGTGA 882 46.83 MGYLNPVLSCSSQVHAAEDVPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLISHPKFISDTKSAIADAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEEAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVLMIKPIQDPEEAARRLMQEAYQRGSADNITCVVVRFLANQGGPSHGSSG 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12767565 12771628 - Conep04aG0178000.1 Cone4ag1725 436703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1725 293 PANTHER PROTEIN PHOSPHATASE 34 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone4ag1725 293 FunFam probable protein phosphatase 2C 59 26 284 - -
Cone4ag1725 293 CDD PP2Cc 33 280 IPR001932 -
Cone4ag1725 293 Pfam Protein phosphatase 2C 63 273 IPR001932 -
Cone4ag1725 293 SMART PP2C_SIG_2 45 280 IPR001932 -
Cone4ag1725 293 SMART PP2C_4 24 278 IPR001932 -
Cone4ag1725 293 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169(InterPro)
Cone4ag1725 293 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Cone4ag1725 293 Gene3D - 26 284 IPR036457 -
Cone4ag1725 293 SUPERFAMILY PP2C-like 28 280 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0002 Cone-Chr14:28189 Cone4ag1725 Cone-Chr4:12767565 2.54E-31 dispersed
Cone14ag0026 Cone-Chr14:216001 Cone4ag1725 Cone-Chr4:12767565 3.62E-44 dispersed
Cone15ag0028 Cone-Chr15:207232 Cone4ag1725 Cone-Chr4:12767565 1.18E-117 dispersed
Cone19ag0650 Cone-Chr19:5557915 Cone4ag1725 Cone-Chr4:12767565 1.62E-47 dispersed
Cone4ag0220 Cone-Chr4:1013385 Cone4ag1725 Cone-Chr4:12767565 4.64E-20 dispersed
Cone4ag1446 Cone-Chr4:11479275 Cone4ag1725 Cone-Chr4:12767565 1.12E-125 dispersed
Cone4ag1725 Cone-Chr4:12767565 Cone7ag1486 Cone-Chr7:10425499 2.41E-125 dispersed
Cone7ag0230 Cone-Chr7:979564 Cone4ag1725 Cone-Chr4:12767565 5.99E-20 dispersed
Cone4ag1725 Cone-Chr4:12767565 Cone7ag1645 Cone-Chr7:11098796 3.35E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1725 K17506 - gmx:100795017 553.132