Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1728 ATGGCAACTACAATTTGCTCTTTCCTCATTGTTTGCTTCTTATCACTTCAATGCATTATCTGCAGCATGGAAGCAAGTCATGATCAGGCTACTCATCGAACCCATGACTTTCAGATTTTACAACTCAGCTCTCTTCAACCACAAACTACTTGCACCACCCGCTCTTCACCAGACTCCAAAGAGGCTACCGCATCTCTTGAAGTGATACACAGGCAAGGTCCATGCATACGAAACAAGGGAGACCATCATAAACCAAATGGGGCGGCTGCCATAGCTGATCATTTCAATGAGAAAATCCAGCTCCAATTAGATCAATCGAGAGTTAACTCCATCCAATCCAAAATCTCTCGGGAAAATAAGTCGGGAAGTGTTATTCTCCCAGCTGACGAGGGTAGTCCAATTGGCTACAGTAGTTACGTAGTTCAGGTTGGACTTGGTACCCAAAAAGATGAACTCTTACTCGTATTTGACACGGGCAGTGACCTCCTTTGGACCCAATGCAAACCTTGTACTGTCGAATGCTATAAGCAAGTTGATCCTATTTTTGACCCTACGAAATCCAAATCATACACTAATTTATCTTGCAACTCGCGATTGTGTACACACCCCGATGAAGGATACCGAACTCGGTGTACGGATTCGACCTGCACATATGGAGTAGGATATGGTGATAAGTCGTACACAATGGGATTTCTCGCTCAAGAAACATTGACGTTGACCTCATCAAACGTGTTCAAAAATTTCATATTTGGTTGCGGTGTAAACAATCACGGCCTATTTGGAGGTATTGCGGGCTTGATTGGCCTTGGACGAGGCAAAACCTCTTTCGTCACACAAACTTCAAGTAAATATAGACAAGTTTTCTCCTACTGTTTACCATCCTCAACTAGCTACTCCGGTCACCTCACCTTTGGTATGAAAGGTGAATCCTCCGTAAAATACACTCCGTTAGTGACGGTTTCAGACGGTTCTACCCTTTACGGCCTTAACCTGATTGCGATTAGTGTTGGAGGGAAGAAGTTACCAATTTCAGCTACTGTGTTTTCAAAAGCAGGCACGATCATTGACTCTGGTACTGTGATATCCCGTTTGCCGCCAGGGGCATACAGTGCCTTACGAGCAGAGTTTGCTGCACAGATGAGAAGCTATCCGAAAGCAAAGCCGTCTTCTATACTAGACACGTGTTATAACTTAAAGGGTTATGCCAAGATTTCAGTTCCATCCGTAAGCCTACATTTCAGCGGGCTTACATTGCAGGTCGACAAAACAGGGACACTGTACTCGATCGACCAAAAAACATCGGTGTATTGTCTTGCATTTGCGGCGAATAGTAATGCGAGTGATGTGGCCATATTTGGGAGCTGGCAACAGAGAACATTGGAAGTGGTCTATGATGTTGGACGGGGAAAGGTAGGGTTTGCTCCCGGGGGATGCAATTAA 1440 44.79 MATTICSFLIVCFLSLQCIICSMEASHDQATHRTHDFQILQLSSLQPQTTCTTRSSPDSKEATASLEVIHRQGPCIRNKGDHHKPNGAAAIADHFNEKIQLQLDQSRVNSIQSKISRENKSGSVILPADEGSPIGYSSYVVQVGLGTQKDELLLVFDTGSDLLWTQCKPCTVECYKQVDPIFDPTKSKSYTNLSCNSRLCTHPDEGYRTRCTDSTCTYGVGYGDKSYTMGFLAQETLTLTSSNVFKNFIFGCGVNNHGLFGGIAGLIGLGRGKTSFVTQTSSKYRQVFSYCLPSSTSYSGHLTFGMKGESSVKYTPLVTVSDGSTLYGLNLIAISVGGKKLPISATVFSKAGTIIDSGTVISRLPPGAYSALRAEFAAQMRSYPKAKPSSILDTCYNLKGYAKISVPSVSLHFSGLTLQVDKTGTLYSIDQKTSVYCLAFAANSNASDVAIFGSWQQRTLEVVYDVGRGKVGFAPGGCN 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12783585 12785520 + Conep04aG0178300.1 Cone4ag1728 436706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1728 479 ProSiteProfiles Peptidase family A1 domain profile. 139 474 IPR033121 -
Cone4ag1728 479 FunFam Aspartyl protease AED1 115 305 - -
Cone4ag1728 479 Pfam Xylanase inhibitor C-terminal 327 474 IPR032799 -
Cone4ag1728 479 SUPERFAMILY Acid proteases 135 478 IPR021109 -
Cone4ag1728 479 Gene3D Acid Proteases 306 479 IPR021109 -
Cone4ag1728 479 FunFam Aspartyl protease AED1 306 479 - -
Cone4ag1728 479 Gene3D Acid Proteases 110 305 IPR021109 -
Cone4ag1728 479 PANTHER ASPARTYL PROTEASES 48 478 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone4ag1728 479 Pfam Xylanase inhibitor N-terminal 139 305 IPR032861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1728 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1004 Cone-Chr15:8139169 Cone4ag1728 Cone-Chr4:12783585 4.66E-88 dispersed
Cone4ag1728 Cone-Chr4:12783585 Cone5ag1013 Cone-Chr5:4388831 1.92E-77 dispersed
Cone4ag1728 Cone-Chr4:12783585 Cone4ag1729 Cone-Chr4:12786459 8.33E-155 tandem
Cone17ag0286 Cone-Chr17:1371189 Cone4ag1728 Cone-Chr4:12783585 9.28E-85 wgd
Cone20ag1122 Cone-Chr20:7681313 Cone4ag1728 Cone-Chr4:12783585 5.22E-82 wgd
Cone4ag1728 Cone-Chr4:12783585 Cone7ag1648 Cone-Chr7:11114309 5.83E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g617 . . . . . . . . . . . . Car09g00340 . . . Cpe06g00279 . . . . . . . Cla05g01658 Cam05g1769 Cec05g1777 Cco05g1835 Clacu05g1759 Cmu05g1645 Cre05g1773 Cone4ag1728 Cone7ag1648 Cone17ag0969 . . . . . . . . . . . . . . . Cmo09g00393 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36