Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag1730 | ATGGCGGAAGTGATGTTGATGCAAGAGATCGAGGACGCGGCGAATCATCTTCAAATAGATCTCTCTCAAGTCGATTACGACTCTATTCGTCTTCCTCATGGCGATGATTTTGGCATTATAAGTGATGACGATGATGCTCTACATGAGGAGAATGTCGAGTTTGACAATGCTTTCGGCAATATAATTGTTGTTGATAATCTTCCCGTTGTTCCTCCTGAAAAGTTTGAGAAGCTTGAAGGGGTTATCTACAAAATTTACAGCCAGATTGGAGTGATAAAGGAGGATGGCCTCTGGATGCCTGTTGACCAAGAAACGAAGAAAAGCTTAGGTTACTGCTTCATTGAGTACAATACCCCACAGGAGGCTGAACTTGCTAAGGAGAAGACACATGGATATAAGTTGGACAGAGCACATATCTTTGCTGTCAATATGTTTGAAGACTTCGATAGATTTATGAAAGTACCAGATGAGTGGGCCCCTCCTGAAAGCAAGCCATATACTCCCGGGGAAAATCTCCAGCAGTGGCTTACAGATGAAAAAGCCCGTGATCAGTTTGTGATTCATGCTGGTTCTGATACTGAGGTTCTATGGAATGATGCCAGGCATTTGAAGCCCGAGCCTGTGTACAAGCGTGCGGTTTGGACGGAGAGCTTTGTGCAGTGGTCGCCACTTGGAACTTACTTGGCTACAGTTCACCGTCAGGGTGCTGCTGTCTGGGGTGGTGCCAATACCTTTAACCGTCTAATGCGCTACGCTCATCCTCAGGTTAAGCTAATTGATTTTTCCATGGGCGAGAAATTTCTCGTAACTTACTGCAGTTATGAGCCAAGCAATCCCCGCGATACAAATAGGGTTGTTATAAATATTTTTGATGTGAGAACTGGAAAACTTATGAGGGATTTTAAGGGAACTCCCGATGACTTTGCAATTGGAGCAAGTGGGGGTGTTACAGGAGTCTCTTGGCCTGTTTTCAGGTGGGGTGGCGGAAAAGATGACAAGTATTTTGCTAGGATTGGCAAAAATCTAATTTCTGTCTATGAAACAGAGACCTTTTCACTTGTGGATAAGAAATCCTTGAAGGTTGAAAATGTCGTGGACTTCTGTTGGTCCCCTACGGATCCCATTCTTGCACTCTTTGTTCCAGAACTTGGTGGTGGCAACCAGCCTGCAAGGGTGAGTCTTGTTCAAATTCCCAGCAAAGAGGAGCTGAGACAGAAGAATTTGTTCAGTGTTAGCGACTGCAAAATGTATTGGCAAAGCAATGGTGAATATCTTGCTGTAAAGGTCGATCGCTATACAAAGACTAAGAAAAGCACGTACACAGGATTCGAGCTTTTCCATATAAAAGAAAGGGATATACCCATCGAGGTTTTGGAGCTTGAGAATAAGAATGACAAGATCATAGCCTTTGCCTGGGAGCCAAAAGGCCACAGGTTTGCAATCATCCATGGTGATAACCCTAGGCCTGATGTAAGCTTTTACTCAATGAGGAGCGGCCACAACACTGGCCGTGTTTCAAAGCTTATCACTTTGAAAGGAAAGCAAGCAAATGCTCTTTTCTGGTCGCCTTCTGGCCATTTCATTATTCTTGCTGGATTGAAAGGCTTCAATGGGCAGTTGGAGTTTTACAATGTTGATGAGCTTGAAACCATGGCAACGGCAGAGCATTTCATGGCAACAGATATTGAGTGGGATCCTACTGGAAGGTATGTCGCAACTGCTGTCACTTCGGTTCACGAGATGGAAAATGGTTTCAATGTATGGTCATTTAATGGCAAGCTGCTATACAGGACACTGAAAGATCATTTCTTTCAGTTCTTATGGCGGCCAAGGCCACCATCTTTCTTGAGCCCCGAGAAAGAAGAAGAGATTGCAAAGAACTTAAAGAAGTATAGTAAGAAGTACGAGGCAGAAGATCAGGACGTGTCTATGCTTCTGAGTGAGCAGGATCGTGAGAAGAGGAAAATGTTAAAGGATGAATGGGAAAAATGGGTCGATGAGTGGAAGAGATTGCATGAAGAGGAGAAGCTCATTAGGCAGCAACTAAGAGATGGAGAAGCCAGTGATGAAGAAGAGGAATATGAAGCAAAGGAAATCGAAGTTGAAGAGATTATAGATGTCAATGAGGAAATTCTTTCTTTCGACGAGTGA | 2151 | 43.84 | MAEVMLMQEIEDAANHLQIDLSQVDYDSIRLPHGDDFGIISDDDDALHEENVEFDNAFGNIIVVDNLPVVPPEKFEKLEGVIYKIYSQIGVIKEDGLWMPVDQETKKSLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVNMFEDFDRFMKVPDEWAPPESKPYTPGENLQQWLTDEKARDQFVIHAGSDTEVLWNDARHLKPEPVYKRAVWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSMGEKFLVTYCSYEPSNPRDTNRVVINIFDVRTGKLMRDFKGTPDDFAIGASGGVTGVSWPVFRWGGGKDDKYFARIGKNLISVYETETFSLVDKKSLKVENVVDFCWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVKVDRYTKTKKSTYTGFELFHIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDNPRPDVSFYSMRSGHNTGRVSKLITLKGKQANALFWSPSGHFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNVWSFNGKLLYRTLKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKDEWEKWVDEWKRLHEEEKLIRQQLRDGEASDEEEEYEAKEIEVEEIIDVNEEILSFDE | 716 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 12791216 | 12795255 | - | Conep04aG0178500.1 | Cone4ag1730 | 436708 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag1730 | 716 | Pfam | Eukaryotic translation initiation factor eIF2A | 406 | 606 | IPR013979 | - | |
| Cone4ag1730 | 716 | Gene3D | - | 55 | 154 | IPR012677 | - | |
| Cone4ag1730 | 716 | SMART | rrm1_1 | 61 | 142 | IPR000504 | GO:0003723(InterPro) | |
| Cone4ag1730 | 716 | CDD | RRM_eIF3B | 59 | 143 | IPR034363 | - | |
| Cone4ag1730 | 716 | Pfam | RNA recognition motif | 82 | 136 | IPR000504 | GO:0003723(InterPro) | |
| Cone4ag1730 | 716 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 55 | 154 | - | - | |
| Cone4ag1730 | 716 | Coils | Coil | 687 | 707 | - | - | |
| Cone4ag1730 | 716 | SUPERFAMILY | DPP6 N-terminal domain-like | 217 | 599 | - | - | |
| Cone4ag1730 | 716 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 147 | IPR000504 | GO:0003723(InterPro) | |
| Cone4ag1730 | 716 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 49 | 713 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
| Cone4ag1730 | 716 | Gene3D | - | 418 | 620 | IPR015943 | GO:0005515(InterPro) | |
| Cone4ag1730 | 716 | Gene3D | - | 181 | 385 | IPR015943 | GO:0005515(InterPro) | |
| Cone4ag1730 | 716 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 181 | 382 | - | - | |
| Cone4ag1730 | 716 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 411 | 626 | - | - | |
| Cone4ag1730 | 716 | SUPERFAMILY | RNA-binding domain, RBD | 57 | 139 | IPR035979 | GO:0003676(InterPro) | |
| Cone4ag1730 | 716 | PIRSF | Transl_init_eIF3b | 7 | 713 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
| Cone4ag1730 | 716 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 36 | 709 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag1730 | Cone-Chr4:12791216 | Cone7ag1649 | Cone-Chr7:11118581 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag1730 | K03253 | - | csv:101213144 | 1297.34 |