Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1730 ATGGCGGAAGTGATGTTGATGCAAGAGATCGAGGACGCGGCGAATCATCTTCAAATAGATCTCTCTCAAGTCGATTACGACTCTATTCGTCTTCCTCATGGCGATGATTTTGGCATTATAAGTGATGACGATGATGCTCTACATGAGGAGAATGTCGAGTTTGACAATGCTTTCGGCAATATAATTGTTGTTGATAATCTTCCCGTTGTTCCTCCTGAAAAGTTTGAGAAGCTTGAAGGGGTTATCTACAAAATTTACAGCCAGATTGGAGTGATAAAGGAGGATGGCCTCTGGATGCCTGTTGACCAAGAAACGAAGAAAAGCTTAGGTTACTGCTTCATTGAGTACAATACCCCACAGGAGGCTGAACTTGCTAAGGAGAAGACACATGGATATAAGTTGGACAGAGCACATATCTTTGCTGTCAATATGTTTGAAGACTTCGATAGATTTATGAAAGTACCAGATGAGTGGGCCCCTCCTGAAAGCAAGCCATATACTCCCGGGGAAAATCTCCAGCAGTGGCTTACAGATGAAAAAGCCCGTGATCAGTTTGTGATTCATGCTGGTTCTGATACTGAGGTTCTATGGAATGATGCCAGGCATTTGAAGCCCGAGCCTGTGTACAAGCGTGCGGTTTGGACGGAGAGCTTTGTGCAGTGGTCGCCACTTGGAACTTACTTGGCTACAGTTCACCGTCAGGGTGCTGCTGTCTGGGGTGGTGCCAATACCTTTAACCGTCTAATGCGCTACGCTCATCCTCAGGTTAAGCTAATTGATTTTTCCATGGGCGAGAAATTTCTCGTAACTTACTGCAGTTATGAGCCAAGCAATCCCCGCGATACAAATAGGGTTGTTATAAATATTTTTGATGTGAGAACTGGAAAACTTATGAGGGATTTTAAGGGAACTCCCGATGACTTTGCAATTGGAGCAAGTGGGGGTGTTACAGGAGTCTCTTGGCCTGTTTTCAGGTGGGGTGGCGGAAAAGATGACAAGTATTTTGCTAGGATTGGCAAAAATCTAATTTCTGTCTATGAAACAGAGACCTTTTCACTTGTGGATAAGAAATCCTTGAAGGTTGAAAATGTCGTGGACTTCTGTTGGTCCCCTACGGATCCCATTCTTGCACTCTTTGTTCCAGAACTTGGTGGTGGCAACCAGCCTGCAAGGGTGAGTCTTGTTCAAATTCCCAGCAAAGAGGAGCTGAGACAGAAGAATTTGTTCAGTGTTAGCGACTGCAAAATGTATTGGCAAAGCAATGGTGAATATCTTGCTGTAAAGGTCGATCGCTATACAAAGACTAAGAAAAGCACGTACACAGGATTCGAGCTTTTCCATATAAAAGAAAGGGATATACCCATCGAGGTTTTGGAGCTTGAGAATAAGAATGACAAGATCATAGCCTTTGCCTGGGAGCCAAAAGGCCACAGGTTTGCAATCATCCATGGTGATAACCCTAGGCCTGATGTAAGCTTTTACTCAATGAGGAGCGGCCACAACACTGGCCGTGTTTCAAAGCTTATCACTTTGAAAGGAAAGCAAGCAAATGCTCTTTTCTGGTCGCCTTCTGGCCATTTCATTATTCTTGCTGGATTGAAAGGCTTCAATGGGCAGTTGGAGTTTTACAATGTTGATGAGCTTGAAACCATGGCAACGGCAGAGCATTTCATGGCAACAGATATTGAGTGGGATCCTACTGGAAGGTATGTCGCAACTGCTGTCACTTCGGTTCACGAGATGGAAAATGGTTTCAATGTATGGTCATTTAATGGCAAGCTGCTATACAGGACACTGAAAGATCATTTCTTTCAGTTCTTATGGCGGCCAAGGCCACCATCTTTCTTGAGCCCCGAGAAAGAAGAAGAGATTGCAAAGAACTTAAAGAAGTATAGTAAGAAGTACGAGGCAGAAGATCAGGACGTGTCTATGCTTCTGAGTGAGCAGGATCGTGAGAAGAGGAAAATGTTAAAGGATGAATGGGAAAAATGGGTCGATGAGTGGAAGAGATTGCATGAAGAGGAGAAGCTCATTAGGCAGCAACTAAGAGATGGAGAAGCCAGTGATGAAGAAGAGGAATATGAAGCAAAGGAAATCGAAGTTGAAGAGATTATAGATGTCAATGAGGAAATTCTTTCTTTCGACGAGTGA 2151 43.84 MAEVMLMQEIEDAANHLQIDLSQVDYDSIRLPHGDDFGIISDDDDALHEENVEFDNAFGNIIVVDNLPVVPPEKFEKLEGVIYKIYSQIGVIKEDGLWMPVDQETKKSLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVNMFEDFDRFMKVPDEWAPPESKPYTPGENLQQWLTDEKARDQFVIHAGSDTEVLWNDARHLKPEPVYKRAVWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSMGEKFLVTYCSYEPSNPRDTNRVVINIFDVRTGKLMRDFKGTPDDFAIGASGGVTGVSWPVFRWGGGKDDKYFARIGKNLISVYETETFSLVDKKSLKVENVVDFCWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVKVDRYTKTKKSTYTGFELFHIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDNPRPDVSFYSMRSGHNTGRVSKLITLKGKQANALFWSPSGHFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNVWSFNGKLLYRTLKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKDEWEKWVDEWKRLHEEEKLIRQQLRDGEASDEEEEYEAKEIEVEEIIDVNEEILSFDE 716
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 12791216 12795255 - Conep04aG0178500.1 Cone4ag1730 436708
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1730 716 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Cone4ag1730 716 Gene3D - 55 154 IPR012677 -
Cone4ag1730 716 SMART rrm1_1 61 142 IPR000504 GO:0003723(InterPro)
Cone4ag1730 716 CDD RRM_eIF3B 59 143 IPR034363 -
Cone4ag1730 716 Pfam RNA recognition motif 82 136 IPR000504 GO:0003723(InterPro)
Cone4ag1730 716 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Cone4ag1730 716 Coils Coil 687 707 - -
Cone4ag1730 716 SUPERFAMILY DPP6 N-terminal domain-like 217 599 - -
Cone4ag1730 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723(InterPro)
Cone4ag1730 716 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 49 713 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cone4ag1730 716 Gene3D - 418 620 IPR015943 GO:0005515(InterPro)
Cone4ag1730 716 Gene3D - 181 385 IPR015943 GO:0005515(InterPro)
Cone4ag1730 716 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Cone4ag1730 716 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Cone4ag1730 716 SUPERFAMILY RNA-binding domain, RBD 57 139 IPR035979 GO:0003676(InterPro)
Cone4ag1730 716 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cone4ag1730 716 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 36 709 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1730 Cone-Chr4:12791216 Cone7ag1649 Cone-Chr7:11118581 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1730 K03253 - csv:101213144 1297.34