Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1737 ATGATGTCCTCTAGAAACCCTTCTTACACTAACCCAACACCCTGCGACCATCTTTCAGATTACAAGCTTAAACATGGGTTAGCCGGCTACAAATCAATCCAAAACTTGATCCAAACCTCTCCTAATGGAAGAACCTCTCTTCATAAACTGGATTCAAACATACCCAGATGCACTTCTTGTAATGGGTATTCAAAAAGACTCTATTATTGCTTGATTTGCTCTTCAATCTTTTGCTCTGACCATACTTTCCTTCACGCCCAGTCCGAAAGTGGCCACGATATTTCTGTTGACATCCTTAGGGCTGAGCTTTTTTGCTTCCCCTGCTCTGATCAAGTTTATGATCCCGATTTTGATAAGATTGTGATGTCTAGTCACATCCTGGGTGTGCCCAAGATTCAAGAGAGATCTGAGAGTATTGGTCAGAGATTGAGCAAGAGGAGACGACTAACTTCTTCATCTCCTCCTATTGGTTTAGGAATGGAGCTTGTGGATTTGAAGAAGCTGAAACCATTGACTTGTATTAGAGACAAGAAGGCGAAATCTTGTTACCCATTAGGTTTGAGGGGATTGAATAATTTGGGGAATACTTGTTTTATGAATTCTGTTCTTCAAGCATTACTTAATGCACCTCCTTTGAGAAACTACTTCTTGAGTGATCAGCATAGCAGAGAAATTTGCCGGAAAAGGTCAGGGGATCAGTTATGTCTCCAATGTGACATTGCCCGGATTTTTGCAGCAGTATTTTCGGGTGACCGGAATACTTATAGTCCTGCTCAATTTCTTTACAGTTGGTGGCAGCATTCTGCAAGTTTCGCAAGTTACGAGCAGCAAGACGCGCATGAGTTCTTCATTTCGGTATTAGAAAGGATCCATGAGAGAGAAGGGAAATTCAAGAACCAAAGTAAAGATTGTATAGATTGCAAGTGCATTGCTCACAAGGCATTTTACGGGCAGTTAAGATCCGACGTCACATGCCTGACTTGTGGTTTCACTTCAACAACTTTCGACCCTTGTGTCGATATTTCTCTCAACTTAGACTCGAACAATCACTCCTTAAGAGACATATCTACTCTATCCAGCTGTTTAAATTTATTCACAAGGCCAGAAAAATTAGGGTCGGACCAGAAACTATTCTGCCAGAACTGTCAAGAAAGGCAAGACTCATTGAAACAAATGTCTATTGGAAAGCTACCATTAGTACTATGCTTGCATATTAAACGGTTTGAGCATTCTTCTATCAAGAACATGTCAAGAAAAATAGACCGCCATTTGCTCTTTCCGTTCTCATTAGAGATGAGGCCGTATTTGTCATCTTCCATTGTTAGGAAGAGATTTGGAAACAGGATATTTGCTTTGGAGGGAGATGAACCTGACGGTTCGAGCGAGTTTGAGATATTTGCGGTGATTGCTCATTCGGGTGGATTGGAATCGGGACATTACGTGACTTATCTGAGGTTAAGGAATCAATGGTATAAATGTGATGATGCTTGGATTACTGAGGTGGACGTTTGGGTGGGAAAGAAATGGCTAGCCAAACTGCTACCACTGGCAATGCCCGGTCTAGAACATACTGGACGCCTTCAATGGAGCGATATTTTGTCGACCTTTGTTAGAACAGATGCACCGAGGGAACAGGACGTTTTGAAAAACCGGTACACGAATTTGTGGAAGCAATTCAATGAGGTCAACAGTCTTCTGGGTCATACTGGCTTTTCTTGGGATGAAGCTCAACAAATGGTTGTAGCTGATGATTATGTTAATCCAGATGCAAAGCCCTACAAAACTAAAGCAGTGCTTAATTTCAATGATTTGTGCTTGATTTATGTGTATACAAATGCTGATGGGCGATACAGTCGGTCTAGTCATGATCTAGACATTGATGAAGAAATGCAAGGTGATGGGAATGGTGGCTTTGGTCCTTCAAGTACCAAGCAGCCAAGGACAGAATGGACCATAGAGATGGACCGATTTTTTATTGATCTTATGATTGATCAAATAGAAAGAGGCAATAAGACTGCTGATACATTCAGTAAACAAGCATGGACAGATATGCTTGCTTTGTTCAATGCAAAATTTTTTGCTCAACATGGGAAAAGGGTTATAAGGCATAGATACAAGATATTGTGTAAGTACTATAGTGATAATATGAACCTTCTTCAGCAAGATGGGTTCTCCTGGGATGAAATTCAGCAAATGTTAGTTGCTGATGATGATGTTTGGGATAACTATATCAAGGCACAACCATTTGCACGGACATATAGAATGAAAACCTTTCCAAACTACTATGATTTGGTGCTAATATATGGCAACAAATTTGACAATGGAAGTCTGGACAAAAATGTTGGCCATGACTTATCACGGGCTAAGGCCAGTGAAGCAAGTAGAAACCAAATAATGCTTACTAGTAGCGATCGTACAAGAATGTACTGGATCACACCACCAATGGACCATTATCTCATAGACTTGTTGCTGGAACAGGTGCATAGAGGAAACAAAGTCGGCCATACATTCATAATCCAAGCTTGGGGTGACATGGTTACAAATTTCAACAGACAATTCAGATCCAACCATGACAAGGATGTTCGGAAAAATCGGTACAAGCATTTGAAGCGATTGTACAATGAAATAAAGATTCTTTTTGAGCAAAAGAGTTTTCATGGGATGAAAAGCGAGAAATTGTTACAGTTGATGATCATGTTTGGGATGCTTATATCAAGGTGA 2721 40.54 MMSSRNPSYTNPTPCDHLSDYKLKHGLAGYKSIQNLIQTSPNGRTSLHKLDSNIPRCTSCNGYSKRLYYCLICSSIFCSDHTFLHAQSESGHDISVDILRAELFCFPCSDQVYDPDFDKIVMSSHILGVPKIQERSESIGQRLSKRRRLTSSSPPIGLGMELVDLKKLKPLTCIRDKKAKSCYPLGLRGLNNLGNTCFMNSVLQALLNAPPLRNYFLSDQHSREICRKRSGDQLCLQCDIARIFAAVFSGDRNTYSPAQFLYSWWQHSASFASYEQQDAHEFFISVLERIHEREGKFKNQSKDCIDCKCIAHKAFYGQLRSDVTCLTCGFTSTTFDPCVDISLNLDSNNHSLRDISTLSSCLNLFTRPEKLGSDQKLFCQNCQERQDSLKQMSIGKLPLVLCLHIKRFEHSSIKNMSRKIDRHLLFPFSLEMRPYLSSSIVRKRFGNRIFALEGDEPDGSSEFEIFAVIAHSGGLESGHYVTYLRLRNQWYKCDDAWITEVDVWVGKKWLAKLLPLAMPGLEHTGRLQWSDILSTFVRTDAPREQDVLKNRYTNLWKQFNEVNSLLGHTGFSWDEAQQMVVADDYVNPDAKPYKTKAVLNFNDLCLIYVYTNADGRYSRSSHDLDIDEEMQGDGNGGFGPSSTKQPRTEWTIEMDRFFIDLMIDQIERGNKTADTFSKQAWTDMLALFNAKFFAQHGKRVIRHRYKILCKYYSDNMNLLQQDGFSWDEIQQMLVADDDVWDNYIKAQPFARTYRMKTFPNYYDLVLIYGNKFDNGSLDKNVGHDLSRAKASEASRNQIMLTSSDRTRMYWITPPMDHYLIDLLLEQVHRGNKVGHTFIIQAWGDMVTNFNRQFRSNHDKDVRKNRYKHLKRLYNEIKILFEQKSFHGMKSEKLLQLMIMFGMLISR 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12811541 12817449 + Conep04aG0179200.1 Cone4ag1737 436715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1737 906 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 188 519 IPR028889 -
Cone4ag1737 906 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 129 IPR013083 -
Cone4ag1737 906 PANTHER EXPRESSED PROTEIN 801 890 - -
Cone4ag1737 906 Pfam Myb/SANT-like DNA-binding domain 528 585 IPR024752 -
Cone4ag1737 906 Pfam Myb/SANT-like DNA-binding domain 812 886 IPR024752 -
Cone4ag1737 906 Pfam Myb/SANT-like DNA-binding domain 649 743 IPR024752 -
Cone4ag1737 906 FunFam Ubiquitinyl hydrolase 1 182 514 - -
Cone4ag1737 906 Gene3D Cysteine proteinases 183 511 - -
Cone4ag1737 906 SUPERFAMILY RING/U-box 13 120 - -
Cone4ag1737 906 SMART Zf_UBP_1 56 103 IPR001607 GO:0008270(InterPro)
Cone4ag1737 906 FunFam Ubiquitinyl hydrolase 1 9 130 - -
Cone4ag1737 906 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 189 204 IPR018200 GO:0004843(InterPro)
Cone4ag1737 906 Pfam Zn-finger in ubiquitin-hydrolases and other protein 57 116 IPR001607 GO:0008270(InterPro)
Cone4ag1737 906 SUPERFAMILY Cysteine proteinases 186 503 IPR038765 -
Cone4ag1737 906 Pfam Ubiquitin carboxyl-terminal hydrolase 188 503 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cone4ag1737 906 ProSiteProfiles Zinc finger UBP-type profile. 38 131 IPR001607 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1737 K11366 - - csv:101210858 744.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1737 Cone-Chr4:12811541 Cone8ag0473 Cone-Chr8:3149747 2.15E-39 dispersed
Cone7ag1657 Cone-Chr7:11143283 Cone4ag1737 Cone-Chr4:12811541 1.20E-178 transposed
Cone4ag1737 Cone-Chr4:12811541 Cone7ag1656 Cone-Chr7:11140604 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g595 . . . . Bpe02g01266 . . . . . . . Car09g00350 . . . Cpe06g00286 . . . . . . . Cla05g01667 Cam05g1782 Cec05g1788 Cco05g1847 Clacu05g1770 Cmu05g1655 Cre05g1784 Cone4ag1737 Cone7ag1657 Cone17ag0974 Cone20ag0315 . . . . . Blo18g00251 Bda01g01017 . . . . . . . Cmo09g00402 Cma09g00399 . . . . . Bhi09g03029 . . . . . . . . . . . . . . . . Cme07g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012836 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 0 1 1 1 1 28