Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1741 ATGGGTATATACCTTAGCACTCCGAAAACTGAAAAATTCTCTGAAGATGGAGGAAATGAAAGGCTTAGATATGGTCTGTCCTCCATGCAAGGTTGGCGTGCAACTATGGAAGATGCTCATGCTGCATATCCTGATCTGGATGCTTCAACTTCATTCTTTGGTGTTTTTGATGGTCATGGAGGTAAGGTGGTTGCCAAGTTCTGTGCGAAGTATCTTCACCAGCAAGTTCTGAAAAGTGAAGCATATGGTGCTGGGGATGTAGGAACTTCTGTTCAGAAAGCATTTTTCAGAATGGATGAAATGATGCGTGGGCAAAGGGGCTGGAGAGAATTAGCTATTTTGGGTGATAAAATAAACAAGTTTACTGGCATGATAGAAGGGTTGATCTGGTCTCCAAGAAGCAGTGATGGGAATGACCGAGTTGATGATTGGGCTTTTGAGGAGGGCCCACACTCTGGTTTTACGGGCCCAACTTCAGGGTGCACAGCTTGTGTTGCCATCCTTAGAAACAACGAACTTGTCGTTGCAAATGCCGGAGATTCTCGCTGTGTTTTATCAAGAAGGGGTCAGGCACACAATCTGTCTAGAGATCACAAACCTGATCTTGAGGCCGAAAAGGAAAGAATTCTGAAAGCTGGTGGTTTTATCCATGCCGGTCGAGTCAATGGTAGCTTGAACCTAGCTAGAGCTATTGGTGACATGGAATTCAAGCAGAATAAATTTTTGCCAGCTGAACGGCAAATTGTAACTGCCAATCCCGATGTTCTCAGTATCGAGCTTTCTGAGGATGATGAGTTTCTTGTGCTCGCATGCGATGGAATCTGGGACTGCCTGTCTAGTCAGCAACTGGTAGATTTTATATGA 864 44.68 MGIYLSTPKTEKFSEDGGNERLRYGLSSMQGWRATMEDAHAAYPDLDASTSFFGVFDGHGGKVVAKFCAKYLHQQVLKSEAYGAGDVGTSVQKAFFRMDEMMRGQRGWRELAILGDKINKFTGMIEGLIWSPRSSDGNDRVDDWAFEEGPHSGFTGPTSGCTACVAILRNNELVVANAGDSRCVLSRRGQAHNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAERQIVTANPDVLSIELSEDDEFLVLACDGIWDCLSSQQLVDFI 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12829972 12833727 - Conep04aG0179600.1 Cone4ag1741 436719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1741 287 SUPERFAMILY PP2C-like 3 287 IPR036457 -
Cone4ag1741 287 CDD PP2Cc 23 287 IPR001932 -
Cone4ag1741 287 Pfam Protein phosphatase 2C 157 287 IPR001932 -
Cone4ag1741 287 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Cone4ag1741 287 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Cone4ag1741 287 Gene3D - 1 287 IPR036457 -
Cone4ag1741 287 PANTHER PROTEIN PHOSPHATASE 2C 21 287 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone4ag1741 287 SMART PP2C_4 13 287 IPR001932 -
Cone4ag1741 287 ProSiteProfiles PPM-type phosphatase domain profile. 23 287 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1741 Cone-Chr4:12829972 Cone7ag1942 Cone-Chr7:12392172 9.06E-32 dispersed
Cone20ag1132 Cone-Chr20:7728195 Cone4ag1741 Cone-Chr4:12829972 4.58E-170 wgd
Cone4ag1741 Cone-Chr4:12829972 Cone7ag1661 Cone-Chr7:11158108 4.13E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1741 K17499 - mdm:103442179 540.806