Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1746 ATGAAGGGAGATGTATTGGCGTGGTTGGTTGGAAATGCGTCGAGGAGTCTGGATATAACAGCTCAGTACTGGGAGTTACTTGCTTCTTCTAACGATTCTCGCTCCGGCGATTACGGATACTCTGAGGATGATCTGAATAGCTTCGGTGCTGCCGAAGGTTACAAGGTTTACAGATCTATCGAGAATGCTGCTGATCGCAACGGATCAGGCATAGTACACGCAAAAGTTTGGATATCAGATAACAGGGCTGTGTACTTCGGATCTGCAAATCGGGACTGGAAATCTCTCACACAGGTGAAGGAGCTAGGGATCTATCTTGTAGGGCGTCCAAGTATAGCAGCACAGGTTGAGATGTATAGATTTATATCTAAGAGTTTATTCTGCCACAGATCACCTCTTCCACCATACCTGGAGATTCCCCATGTTTCTGGATATCCATATCTGTCTGATCCTTATACTTTTACAAAGTCCATTCGGACTCCTGGAAGCAACATTTCAAGTTTACCGCCATACTCCAACTATCTCTCCTTTTCACCTCCAGAGCTATTATTTGGCACGCAACAGATGGATGAACAGGCGTGGGTGGAGACAATCAAATCTGTGAAAATTGGAGGAACTGTAAGAATTCGTTCCATGGACTGGCTTGGTCAATCTGAATTTACAAACCCTGCAATTTCCTGGTCAGCCCTTTCTTCCGCTATATCAGAGGCTGTCTTCTCCAAGAATGCAACAGTGCAATTACTGGTAGCATACTGGGCTCATTACATTTACGAAACAGATCCATACCTCAAGTCTCTCCTATACTCCAACCTCCTCTGCAATTCCACAAAGTACAGTAACTGTCATGGAAAGGTTCAGATCAAATACTATGTCATCCCCGGTTACAACTTGACAGGACACGCCCTTTATTCCAACAGAACAAGGACTAAAAATATATACCCTGGTTACACCAGAGTTAACCATGGAAAATATGCAGTTAGTGATGTTAGAGCAAACGTTGGAACCAGCAATCTTCTCTGGGATTACTTCTACACCACTGTTGCTGTGAGTTTTGGGACATACAATCCTGCTATCGTTGAGCAGCTTCAGCAAGTTTTTGATGCCGATTGGGATTCTCCGTATACTGTTCCGGTTCAAACTATACAGCAAGGTTATACATTTTTAAACCTGATGAGTCATAGGTACTTGTCTTGTTCATTGTGTTTATTACTGTGA 1215 43.37 MKGDVLAWLVGNASRSLDITAQYWELLASSNDSRSGDYGYSEDDLNSFGAAEGYKVYRSIENAADRNGSGIVHAKVWISDNRAVYFGSANRDWKSLTQVKELGIYLVGRPSIAAQVEMYRFISKSLFCHRSPLPPYLEIPHVSGYPYLSDPYTFTKSIRTPGSNISSLPPYSNYLSFSPPELLFGTQQMDEQAWVETIKSVKIGGTVRIRSMDWLGQSEFTNPAISWSALSSAISEAVFSKNATVQLLVAYWAHYIYETDPYLKSLLYSNLLCNSTKYSNCHGKVQIKYYVIPGYNLTGHALYSNRTRTKNIYPGYTRVNHGKYAVSDVRANVGTSNLLWDYFYTTVAVSFGTYNPAIVEQLQQVFDADWDSPYTVPVQTIQQGYTFLNLMSHRYLSCSLCLLL 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12850204 12852707 + Conep04aG0180100.1 Cone4ag1746 436724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1746 404 SUPERFAMILY Phospholipase D/nuclease 186 383 - -
Cone4ag1746 404 Gene3D Endonuclease Chain A 4 122 - -
Cone4ag1746 404 PANTHER PHOSPHOLIPASE D - RELATED 4 67 IPR050874 -
Cone4ag1746 404 CDD PLDc_vPLD3_4_5_like_2 174 371 - -
Cone4ag1746 404 SMART pld_4 68 95 IPR001736 GO:0003824(InterPro)
Cone4ag1746 404 SMART pld_4 316 342 IPR001736 GO:0003824(InterPro)
Cone4ag1746 404 SUPERFAMILY Phospholipase D/nuclease 53 118 - -
Cone4ag1746 404 Gene3D Endonuclease Chain A 181 372 - -
Cone4ag1746 404 Pfam PLD-like domain 41 116 IPR025202 -
Cone4ag1746 404 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 68 95 IPR001736 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1746 K16860 - - csv:101213538 533.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1746 Cone-Chr4:12850204 Cone7ag1665 Cone-Chr7:11176045 1.32E-230 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g580 . . . Bda03g00100 . . Bma04g00093 . . . . . Car09g00356 . . . Cpe06g00292 . . . . . . . Cla05g01677 Cam05g1792 Cec05g1800 Cco05g1856 Clacu05g1779 Cmu05g1664 Cre05g1794 Cone4ag1746 Cone7ag1665 . . Lsi04g01340 . . . . . . . . Bpe04g00084 . . Sed05g1747 . Cmo09g00411 Cma09g00406 . . . . . Bhi09g03012 Tan01g3556 Cmetu07g0002 . Hepe01g1962 Mch11g0499 . . . . . . . . . . . Cme07g00125
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011125 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31