Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1755 ATGACGGTTGAGCAGAGTATAGAGGATCCAAACGATCAGTTCCCGGTCGGTATGCGTGTTCTAGCCGTCGACGACGATCCTACTTGTCTCTTGCTCTTAGAAACTCTGCTTCGTCGCTGCCAATATCACGTGACTACAACAAGTCAGGCAATAACAGCACTAAAAATGTTGAGAGAAAACAAGAACAGATTTGATCTAGTTATCAGTGATGTCCACATGCCTGACATGGATGGGTTTAAGCTTCTTGAGCTTGTTGGCTTGGAGATGGACCTACCAGTCATTATGTTATCTGCAAATGGAGATACAAAGCTGGTCATGAAGGGGATTACTCATGGTGCCTGTGATTATTTGCTTAAGCCCGTTCGGATTGAGGAACTACAGAATATATGGCAGCATGTGATTCGTAGAAAGAAGTTCGATCCAAAGGACAAGATTAATTCTGGAAATCATGACAAGACTCAGTTTAGGAATGGAGGAGGATTCGCCGGGATGGGAAATGTGGATCAAAGTGGGAAGCTCAATAAAAGAAGGAAGGACCCAAATGAAGATGACGATGAGGAGCATGACGATAATGGGCTGGATATTGAAGACCCGTCGGCCCAAAAGAAGCCTCGGGTTGTTTGGTCCGTTGAGCTCCACCGCAAATTCGTAAATGCAGTTAACCAGCTCGGCATAGACAAAGCTGTGCCGAAGAGAATCCTAGATTTGATGAACGTAGAAAAGCTTACAAGGGAAAATGTAGCAAGTCATCTCCAGAAATATAGGCTTTACCTGAAAAGAATCAGCTCAGTGGCAAGCCTGCAGCAACATTCTACACTCACAGATTCTTCCTATATGCAAATCAATTCCCTTAACCAGTTCAAAAACTTACATACTTTAGCCGGATCCTCTTCACAGTATCATAACAACAGTTATTTTCAATCCAACCCGAATTCTGGAATGCTTGATAGATTGAATACACCGTATAATATGGGAATCCAGACACTTCCTTCTCCTTCCAGAAAATTCCGATTGAATAACTCGATCAACTATAGCAAGCACAATATCAACTCTGTTGGAGATTTCTCCCCTGCTTTGCGGATTCTAAACGGCCTTCCTGATGAAAAATTGACCGTTGCTAGCTCGAGCAATAATCCTACTCTTACTTTATCTAATATGTCCTTGGTATCATCTTCGGGACAGTGTCAAGAAACACAAGGAGTACAATTCGGACATCTTTTATCTCAATCTTCTGTTTCGCCCGGTTTTGTAAATAACGGTCTATGTAATGACAGTTGGATGACCCCTGTCCAATCTTCCAGGGTCGAAGCAAATGCTTTTCTACCAAGTTCGTCTCAAATGAGTTGTAGCAGTAGTAGTATTAGATGTGATCGGCAGATAATTACGGATATGCCATTTCAAGGATGGGAGAATTCTGTGGTTGATGTTAATGATGGGGCAGCTCAAATGTTGGGGGACGGAAGTATGGTTTTTTCCGGGAATGAGGATTTCGATTTGATCGCACGGTCGGAGTTTCTGGGTCATCCAGAGAAGGTGAAAGACAGTTTTGGTTCCTTGGAAGATTTGGCTCGGGCCATGACTAAACAGGAACAAGATGGGGTGAAATTATTGGAAGGGGAGTTTGGATGTGATAGTACTTATGCTCTTGGAACATGCATCTGA 1662 43.02 MTVEQSIEDPNDQFPVGMRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKMLRENKNRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGITHGACDYLLKPVRIEELQNIWQHVIRRKKFDPKDKINSGNHDKTQFRNGGGFAGMGNVDQSGKLNKRRKDPNEDDDEEHDDNGLDIEDPSAQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKRILDLMNVEKLTRENVASHLQKYRLYLKRISSVASLQQHSTLTDSSYMQINSLNQFKNLHTLAGSSSQYHNNSYFQSNPNSGMLDRLNTPYNMGIQTLPSPSRKFRLNNSINYSKHNINSVGDFSPALRILNGLPDEKLTVASSSNNPTLTLSNMSLVSSSGQCQETQGVQFGHLLSQSSVSPGFVNNGLCNDSWMTPVQSSRVEANAFLPSSSQMSCSSSSIRCDRQIITDMPFQGWENSVVDVNDGAAQMLGDGSMVFSGNEDFDLIARSEFLGHPEKVKDSFGSLEDLARAMTKQEQDGVKLLEGEFGCDSTYALGTCI 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12894931 12897395 - Conep04aG0181200.1 Cone4ag1755 436733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1755 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 259 IPR017930 -
Cone4ag1755 553 MobiDBLite consensus disorder prediction 141 200 - -
Cone4ag1755 553 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677(InterPro)
Cone4ag1755 553 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Cone4ag1755 553 Gene3D - 18 157 - -
Cone4ag1755 553 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Cone4ag1755 553 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Cone4ag1755 553 SUPERFAMILY Homeodomain-like 201 260 IPR009057 -
Cone4ag1755 553 SUPERFAMILY CheY-like 17 140 IPR011006 -
Cone4ag1755 553 PIRSF RR_ARR_type-B 1 467 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone4ag1755 553 PIRSF RR_ARR_type-B 502 553 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone4ag1755 553 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Cone4ag1755 553 Gene3D - 199 262 - -
Cone4ag1755 553 CDD REC_typeB_ARR-like 20 134 - -
Cone4ag1755 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 309 IPR045279 GO:0009736(InterPro)
Cone4ag1755 553 FunFam Two-component response regulator 199 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0459 Cone-Chr16:6854189 Cone4ag1755 Cone-Chr4:12894931 4.60E-124 dispersed
Cone19ag0738 Cone-Chr19:6052160 Cone4ag1755 Cone-Chr4:12894931 2.28E-95 dispersed
Cone2ag0549 Cone-Chr2:3080122 Cone4ag1755 Cone-Chr4:12894931 1.61E-120 dispersed
Cone4ag1755 Cone-Chr4:12894931 Cone7ag0120 Cone-Chr7:505034 1.48E-84 dispersed
Cone20ag0334 Cone-Chr20:1496150 Cone4ag1755 Cone-Chr4:12894931 2.37E-70 wgd
Cone4ag0611 Cone-Chr4:2810489 Cone4ag1755 Cone-Chr4:12894931 1.68E-118 wgd
Cone4ag1755 Cone-Chr4:12894931 Cone7ag1672 Cone-Chr7:11219297 0 wgd
Cone4ag1755 Cone-Chr4:12894931 Cone7ag0579 Cone-Chr7:2779087 2.84E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46049 PF00244 2014/3/3 1.50E-97 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1755 K14491 - csv:101215220 493.041