Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1757 ATGGTCCGGCAGCAACAGAGATATCGTGGGGTCCGGCAACGCCACTGGGGCTCTTGGGTGTCCGAAATTCGCCATCCTCTCTTGAAGACGAGGATATGGTTAGGGACGTTTGAAACAGCAGAAGACGCGGCAAGAGCGTACGACGAAGCAGCGAGGCTAATGTGTGGGCCCAGAGCCCGAACCAATTTCCCATACAGCAGTGACCACAACACTTCGTCTTCAACGAAGCTTCTCTCCGCCAATTTGACAGCGAAATTGCACAGATGCTATTTAGCTTCTCTGCAGCTGACCAATCAGTTTCCAGTACAAGATGATCACGCCAACACGTCAAAATCACAGTCGCCACGTGTCATTGAAACAGGTGGCATTGTGGGAACAAGTAGTAGCAGCCATTTTACTAGCTCTAGTGCTGCTACACGGTTGCAGGATAAGAAACCCGTAGCTGATTATCAACACCAAGCAGCTGATCAGAATAATAATTGGATGGTAATGAAGAAAGTGAAAGTGGAGAGTAGTAGTAATAGTTGTTTGGGGCAATTCAAGCCACTTGAAGATGATGATATAGAGCAGATGATTCAGGAATTGCTTCATTATGGCTCTATTGAGCTCAGCTCTATTAATATGCACTCTTAA 633 46.76 MVRQQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYSSDHNTSSSTKLLSANLTAKLHRCYLASLQLTNQFPVQDDHANTSKSQSPRVIETGGIVGTSSSSHFTSSSAATRLQDKKPVADYQHQAADQNNNWMVMKKVKVESSSNSCLGQFKPLEDDDIEQMIQELLHYGSIELSSINMHS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12906148 12906943 - Conep04aG0181400.1 Cone4ag1757 436735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1757 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 174 - -
Cone4ag1757 210 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1757 210 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cone4ag1757 210 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1757 210 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1757 210 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1757 210 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1757 210 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cone4ag1757 210 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1757 210 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1757 Cone-Chr4:12906148 Cone7ag0635 Cone-Chr7:3242891 1.15E-30 dispersed
Cone17ag0995 Cone-Chr17:7664321 Cone4ag1757 Cone-Chr4:12906148 3.28E-64 wgd
Cone17ag0257 Cone-Chr17:1218031 Cone4ag1757 Cone-Chr4:12906148 1.34E-50 wgd
Cone20ag0337 Cone-Chr20:1511034 Cone4ag1757 Cone-Chr4:12906148 7.04E-66 wgd
Cone4ag1757 Cone-Chr4:12906148 Cone7ag1675 Cone-Chr7:11230679 4.44E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46050 PF00400 WD40 8.80E-07 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1757 - - - 0.0