Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1764 ATGGCTTACCCCAACCACCTTTCATCACAAGACCTTCCCCTCCACCACTTCACCGACCAGACCGGTCACCAGCAACAATCCAACCAACCACTCTCCGATAACGCCCTACGGACCATCTTATCCGAACCGTTGACCGGGGCTGACCCCACCTCCAAATCTGACCACCACCACCACCAGGCCCATCACGGCCATCAGGTCCATCATCCCCTCCAAGCAACACCCAATTGGCTCAACAGCGCACTTCTCCGCGCCCAAAACCCTCACTCTCACTACTCTACCGACACAACTAACGCCGCCGCTTCCGGCCACACCAACTTTCTCAACCTCCAGTCAACATCCGCCTCCGATCACTCCACAGCTTCGCACACATCCAACCAATGGCTCTCACGCCCGATCCTCCACCGTAACCATAGTGACGTCATAGACCACGTTACCGTCGCCACCGGAGACCCCATAATCGGAGCCGCCGCGGCGGGAACGCTGTCCCACGAATCATCTGACATGAAGAACAACGCAGGCGGAGGCGCTGCAAACAGTACCAGCGTGGAGGAATTGAACAAGAACGAAAGCGGGGGGGTGGGAGAAAGCGGAGGTGGAGTAGTGAATTGGCAGAATGCGAGGTCAAAAGCCGAGATTCTGGCTCATCCACTTTACGAGCAGCTGCTCTCGGCTCATGTGGCATGCCTACGGATCGCCACGCCGGTGGACCAGTTGCCGAGGATCGACGCCCAGCTTGCTCAGTCTCAGAATGTTATGGCCAAGTACTCTTCCTTGGGCCATGGGGCCCAGCCAATGGTTGGAGATGAAAAAGAGCTCGATCAGTTCATGACACATTATGTCCTGTTGCTTTGCTCCTTCAAAGAACAACTCCAGCAACATGTCCGGGTCCATGCAATGGAGGCGGTAATGGCTTGTTGGGAGATTGAGCAATCCCTACAAAGCTTAACAGGAGTTTCTCCGGGCGAAGGTACGGGTGCCACGATGTCTGATGACGAGGATGACCCGATAGACGGCGATGCCACCTTATTTGACGGAAGCTTAGAGGGAGATACCATGGGCTTTGGCCCACTCATCCCTACTGAGAGCGAGAGGTCCTTGATGGAGAGGGTTAGACAAGAACTAAAGCATGAATTAAAGACAGGTTACAAGGAGAAAATAGTGGACATAAGGGAAGAAATATTAAGGAAGAGAAGAGCAGGAAAACTCCCTGGTGACACCACCTCTGTCCTTAAAGCATGGTGGCAATCACACTCTAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGATTGGTACAAGAAACAGGTCTACAGTTGAAGCAGATAAACAATTGGTTCATTAACCAGAGGAAGAGGAACTGGCACAGTAATCCTTCAACTTCTACAGTCTTGAAGAGCAAACGCAAAAGTAATGCAGGTGATAATAGCAGCAGCGACCGGTTCATGTGA 1449 52.73 MAYPNHLSSQDLPLHHFTDQTGHQQQSNQPLSDNALRTILSEPLTGADPTSKSDHHHHQAHHGHQVHHPLQATPNWLNSALLRAQNPHSHYSTDTTNAAASGHTNFLNLQSTSASDHSTASHTSNQWLSRPILHRNHSDVIDHVTVATGDPIIGAAAAGTLSHESSDMKNNAGGGAANSTSVEELNKNESGGVGESGGGVVNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVMAKYSSLGHGAQPMVGDEKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDPIDGDATLFDGSLEGDTMGFGPLIPTESERSLMERVRQELKHELKTGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKSNAGDNSSSDRFM 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12938180 12942590 + Conep04aG0182100.1 Cone4ag1764 436742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1764 482 MobiDBLite consensus disorder prediction 317 336 - -
Cone4ag1764 482 SUPERFAMILY Homeodomain-like 395 458 IPR009057 -
Cone4ag1764 482 ProSiteProfiles 'Homeobox' domain profile. 393 456 IPR001356 GO:0003677(InterPro)
Cone4ag1764 482 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 163 458 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone4ag1764 482 ProSiteProfiles ELK domain profile. 373 393 IPR005539 GO:0003677(InterPro)
Cone4ag1764 482 SMART KNOX2_2 262 317 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag1764 482 CDD homeodomain 396 457 IPR001356 GO:0003677(InterPro)
Cone4ag1764 482 MobiDBLite consensus disorder prediction 456 482 - -
Cone4ag1764 482 Gene3D - 394 455 - -
Cone4ag1764 482 MobiDBLite consensus disorder prediction 164 187 - -
Cone4ag1764 482 SMART ELK_2 373 394 IPR005539 GO:0003677(InterPro)
Cone4ag1764 482 SMART KNOX1_2 206 250 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag1764 482 FunFam homeobox protein knotted-1-like 3 isoform X1 394 455 - -
Cone4ag1764 482 MobiDBLite consensus disorder prediction 164 196 - -
Cone4ag1764 482 Pfam KNOX1 domain 209 249 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag1764 482 Pfam KNOX2 domain 266 316 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag1764 482 Pfam Homeobox KN domain 413 452 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone4ag1764 482 SMART HOX_1 395 460 IPR001356 GO:0003677(InterPro)
Cone4ag1764 482 MobiDBLite consensus disorder prediction 43 68 - -
Cone4ag1764 482 Pfam ELK domain 373 394 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1764 Cone-Chr4:12938180 Cone9ag0742 Cone-Chr9:3527506 4.36E-126 dispersed
Cone17ag0998 Cone-Chr17:7678344 Cone4ag1764 Cone-Chr4:12938180 1.31E-148 wgd
Cone20ag0339 Cone-Chr20:1520759 Cone4ag1764 Cone-Chr4:12938180 1.05E-144 wgd
Cone4ag1764 Cone-Chr4:12938180 Cone7ag1682 Cone-Chr7:11259269 1.32E-307 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46051 PF00400 WD40 8.10E-07 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1764 - - - 0.0