Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1783 ATGAAAAAAGCTTTGATTTTTTGTCATTTCATGGTTCCCATTTGGCTATCCTTTTTCATTATCCTTTTATGTAAGCCCTCTTTGGCCAGTGAACAAAAAAGGATTCTCCCTCTGGGATTTAACGGGTCTCAAATGAACTGGATAGATAACAGTGGACTAATCCTTCTATCCAACAACTCCCAATTCGGGTTTGGATTCAACCCAACTCCAGGAGATGTCACAAAGTTTCTCCTAATCACCATCCACATAGGCAGCTCAAGAGTAATCTGGTCTGCAAATCGCAATTCCCCCGTCTCAAATGCTGACAAGTTCTCTTTTGACGATAAGGGTAATGCGTTCTTGCAGAAAGACGGAAGGATGGTTTGGTCAACTGATACTTCCGACAAAGGTGTTTCCGCAATGGAATTGCAGAACTCGGGAAATCTAGTCTTGCTCGGAAAAGACGGGGAGATAATCTGGCAGAGTTTTAGTCATCCAACAGACACCTTGTTATCAAACCAAGATCTTACTCAAGGTATGAGACTTGTAAGTGATGTTGGAAAACATAATTTGAGCTATTTTCTCGAGATAAAATCCGGTGATATGTTTCTATACGCTGGTTTTCAATCCGATCCGCAACCTTATTGGTCAATGAGAAAGGATTATAGAACAACCATTAACAAAGGTGCTGGGGTGATTTCCTCTGCTTCTATTAGTGCTAATTCATGGAGGTTCTATTCTCAAAACAGAGACTTGCTCTGGCAATTCACTATCTCGGATAATTTGAATGATCCGAATTCAACTTGGATAGCAGTTTTAGGCAAAGACGGAGTAATTACTTTCTATGATATCCAAAATTCCGGGTCAAGTGTAGCCTCGCCTAAGCAAATCCCCCAAGATTACTGTAGTTCTCCTTTATTTTGTGACCCGTATTTGATATGTTATAGCGAAAGTAACAGATGTCAGTGCCCTTCAGCTCTCACCTCGAATTGCCAGTCTGGGACTTTTTCACCGTGTGATCGGTCCAATGGTCCTACTGAGCTCGTGAATGCTGGGACCCAGCTCGGTTATTTTGCACTTGGATTCGTTTCTCCGGTTCCGAATATGCATTTGGATGGCTGCAAAAACTCTTGCATTGCTAACTGTTCTTGCCTTGCTCTATTCTTTCAAACTAGTACCGGAAACTGTTTTCTCTTTGACAATATCGGTAGTTTTCAGAATTCCCAAAACGGGACCGACTTTGTTTCATTTGTCAAGGTGTTGAGCGGAAACAGTCAGGGTAGTTCTGGAAAGGGCAAAAATAGGTTTCCTTTGGTCGTGATCGTCGTTGTTTGTACAGTTCTTGTCATATGTGGTCTAGTATATGCTGGATTTCATTACCTTTATAAAAAGAAGAGATTTTCAGAAAATCTAGACGATTCGGAAGATGCTATCTTGGAGGGTTTAACTGGGATGCCTATACGTTTTACTTACCACGAGCTTCAAACTGCTACTAACAATTTTTCTGTAAAGCTCGGTCAAGGTGGGTTCGGCTCGGTTTATCAAGGCAGTCTTTTGGATGGGACCCGTGTGGCAGTAAAGAAATTGGAAGGAATTGGTCAAGGGAAGAAAGAGTTCCGAGCTGAGGTCAGTATAATAGGAAGCATCCATCATGTTCATTTGGTTCGCCTTAAAGGCTTTTGTGCGGAAGGAACTCATCGGCTTCTAGCTTATGAGTACATGGAAAACGGGTCGTTAGATAAATGGATTTTCAAGAAGAATCAATCGAGCAACTTTTTGTTGGATTGGGATACAAGATTTAACATAGCATTAGGGACGGCAAAAGGACTGGCTTATCTCCATGAAGACTGTGATGCTAAGATTATTCATTGTGACATCAAGCCGGAAAATGTTCTTCTTGACGAAAACTATGATGCTAAAGTGTCAGATTTCGGTTTAGCTAAGCTCATGACTAGAGAACAGAGCCATGTCTTTACTACATTAAGGGGAACAAGAGGGTACTTAGCGCCGGAGTGGATTATGAGCTATGCGATTTCCGAGAAAAGCGATGTGTATAGTTATGGGATGGTTTTGTTGGAAATAATTGGAGGAAGGAAAAACTTTGACCCGTCAGAAACTTCTGAAAAGTCTTACTTCCCGTCCTATGCCTTCAAGATGATCGAAGAAGGGAAAGTAAGGCACATTTTGGACTCTAAGTTGCCCATAAATGAGAATGATGCTCGAGTTTTTACGGCAATTAAGGTTGCCTTGTGGTGTATACAAGAAGACATGAGCCTTCGACCGTCAATGACTAAGGTTGTTCAAATGCTTGAAGGTTTAACATCTGCTCCTCAACCGCCGATTTCTTCCCCTCTCGGGTCTAGAATGTATTCCAATTTCTTTAAGTCGAGTAGTGAAGGGGGGACATCTTCGGGGCCGTCGGATAGTAATAGTGATGCCTATCAGTCTGCTGTTCAACTCTCCGGGCCGAGATAG 2454 42.05 MKKALIFCHFMVPIWLSFFIILLCKPSLASEQKRILPLGFNGSQMNWIDNSGLILLSNNSQFGFGFNPTPGDVTKFLLITIHIGSSRVIWSANRNSPVSNADKFSFDDKGNAFLQKDGRMVWSTDTSDKGVSAMELQNSGNLVLLGKDGEIIWQSFSHPTDTLLSNQDLTQGMRLVSDVGKHNLSYFLEIKSGDMFLYAGFQSDPQPYWSMRKDYRTTINKGAGVISSASISANSWRFYSQNRDLLWQFTISDNLNDPNSTWIAVLGKDGVITFYDIQNSGSSVASPKQIPQDYCSSPLFCDPYLICYSESNRCQCPSALTSNCQSGTFSPCDRSNGPTELVNAGTQLGYFALGFVSPVPNMHLDGCKNSCIANCSCLALFFQTSTGNCFLFDNIGSFQNSQNGTDFVSFVKVLSGNSQGSSGKGKNRFPLVVIVVVCTVLVICGLVYAGFHYLYKKKRFSENLDDSEDAILEGLTGMPIRFTYHELQTATNNFSVKLGQGGFGSVYQGSLLDGTRVAVKKLEGIGQGKKEFRAEVSIIGSIHHVHLVRLKGFCAEGTHRLLAYEYMENGSLDKWIFKKNQSSNFLLDWDTRFNIALGTAKGLAYLHEDCDAKIIHCDIKPENVLLDENYDAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWIMSYAISEKSDVYSYGMVLLEIIGGRKNFDPSETSEKSYFPSYAFKMIEEGKVRHILDSKLPINENDARVFTAIKVALWCIQEDMSLRPSMTKVVQMLEGLTSAPQPPISSPLGSRMYSNFFKSSSEGGTSSGPSDSNSDAYQSAVQLSGPR 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12996990 13000188 + Conep04aG0184000.1 Cone4ag1783 436761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1783 817 CDD B_lectin 55 159 IPR001480 -
Cone4ag1783 817 SUPERFAMILY Protein kinase-like (PK-like) 475 764 IPR011009 -
Cone4ag1783 817 FunFam Serine/threonine-protein kinase 42 157 - -
Cone4ag1783 817 Gene3D Phosphorylase Kinase; domain 1 456 566 - -
Cone4ag1783 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1783 817 FunFam serine/threonine-protein kinase PBS1-like 461 566 - -
Cone4ag1783 817 Gene3D Transferase(Phosphotransferase) domain 1 567 772 - -
Cone4ag1783 817 MobiDBLite consensus disorder prediction 785 817 - -
Cone4ag1783 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 48 775 IPR051343 -
Cone4ag1783 817 FunFam S-receptor-like kinase 5 567 772 - -
Cone4ag1783 817 ProSiteProfiles Protein kinase domain profile. 492 774 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1783 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 211 IPR036426 -
Cone4ag1783 817 ProSiteProfiles Bulb-type lectin domain profile. 40 157 IPR001480 -
Cone4ag1783 817 ProSitePatterns Protein kinases ATP-binding region signature. 498 521 IPR017441 GO:0005524(InterPro)
Cone4ag1783 817 Pfam Protein kinase domain 496 761 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1783 817 CDD STKc_IRAK 498 766 - -
Cone4ag1783 817 Pfam D-mannose binding lectin 88 170 IPR001480 -
Cone4ag1783 817 SMART serkin_6 492 763 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1783 817 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 114 332 IPR011047 -
Cone4ag1783 817 PIRSF SRK 6 814 IPR024171 GO:0004674(InterPro)
Cone4ag1783 817 ProSiteProfiles Bulb-type lectin domain profile. 160 287 IPR001480 -
Cone4ag1783 817 Gene3D - 49 159 IPR036426 -
Cone4ag1783 817 SMART blect_4 46 159 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1783 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0266 Cone-Chr14:1226202 Cone4ag1783 Cone-Chr4:12996990 5.91E-111 dispersed
Cone15ag0287 Cone-Chr15:1338838 Cone4ag1783 Cone-Chr4:12996990 1.90E-113 dispersed
Cone20ag1188 Cone-Chr20:7970444 Cone4ag1783 Cone-Chr4:12996990 1.99E-297 dispersed
Cone2ag0367 Cone-Chr2:1935843 Cone4ag1783 Cone-Chr4:12996990 7.02E-249 dispersed
Cone2ag0368 Cone-Chr2:1940028 Cone4ag1783 Cone-Chr4:12996990 2.58E-118 dispersed
Cone4ag1783 Cone-Chr4:12996990 Cone5ag0905 Cone-Chr5:3880989 3.04E-136 dispersed
Cone4ag1783 Cone-Chr4:12996990 Cone4ag1790 Cone-Chr4:13026499 4.01E-243 proximal
Cone4ag0691 Cone-Chr4:3456765 Cone4ag1783 Cone-Chr4:12996990 2.70E-94 transposed
Cone4ag1385 Cone-Chr4:11200758 Cone4ag1783 Cone-Chr4:12996990 3.51E-149 transposed
Cone4ag1783 Cone-Chr4:12996990 Cone7ag1698 Cone-Chr7:11318915 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82805 PF00587 tRNA-synt_2b 2.30E-27 CL0040 Cone PK