Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1785 ATGGAGAAGATAGTCATGAGGGAGGAGGGGCATATGCCCTTACATTTCCACCAGGGTAATAGACTATATGTGGGTTTCTATGACTTTGTAGCTCTCATCTATCTCATGCATCCGAGCAATCAAGCTCAATTCCTCTTTGTTTCAGCCTTAATCTTTGTTTCCTTTCTTCTTTTTGCTCTCTTTGGAGGGTTTTTGGGTGAAAATCTCTGCAGATTCGACCTCCCTGGGTTTTTGGAGCTGTTTCCATGTCAAAGCTCTTTGGTTTTACCGTTTCAGGGTGTGACAATTTTTTCCCCAGGGGTTCAATATACCCAAATCCCAAGTGAAGAAATTCTTGAACCAAAGGAGGAGGTCTCTATTGACGTTCTTCCCGATGAATGTCTCTTTGAAATCTTCAGACGTTTGCCTACAGGACCTGAAAGGAGCGCAAGTGCTTGTGTTTCTAAGCGTTGGCTTATGCTTTTAAGCAACATCCGAGGGGATGAGCTCTGTGGGCCCACACCAACTCAACTTTTCCAGCCTAACGACGAAATTGAGAGTCAGAGCTGTCTTTCTCGAAACTTAGAAGGGAAGCAAGCAACAGATGTAAGACTTGCTGCTATTTCAGTTGGAAGAACTGCATGTCAAGGAGGTTTGGGAAAGCTTTTGATCCGTGGAAGCAATCATGACCGCAGAGTTACCGATGTTGGTCTTAGAGCAATTGCCAAGGGGTGCCCTTCACTTAAGGTTCTCTCTCTATGGAATCTCTTTTCAATTGGAGACGATGGCCTATGTCAGATTGCCAATGGGTGTCATTTGCTAGAGAAGCTTGACATTTGTCGTTGTCCTGCAATTTCCAACAAGGCTTTGCTCGATCTAGCAAAGAATTGCCCCAGTCTTACAGATATAACAATAGAGTCTTGTCCAAAAATTGGTGATGAAGGTATACTAGCTCTTGGAAAGCACTGTCCCAATTTAAAATCTGTTTCTATTAAAAATTGCCCTCTTGTGGGGGACCAAGGGATTGTGGGATTAATATCTTCCACCTCTTATGTCCTAAACAAGTTGAAGCTTCATGGCTTGAATATTACTGATGTGTCTCTTGCTGTTATTGGGCACTATGGAAAGTCTGTCACCGATCTCTTTCTCTCTGGCCTAATGAATATAAGCGAGAGGGGCCTCTGGGTCATGGGCAATGGTTATGGGCTGCAGAAATTGAAGTCGCTCACAATCGCATTCTGTCATGGAGTTACCAATATTGGTATTGAAGCTTTAGGAAAGGGAAGCCCAAATCTAAAGCAATTCTGCTTAGACAGTGGTCCCCTTTTATCTGACACGGGCTTGATCTCTTTTGCCAAGGCAGCAAAATCACTTGAGATCTTGCAACTGGAAGAGTGCCATGGAATTACAGAGTTTGGGTTTTTCAGTGCTCTTTTAAACTGTGGGGCAAAATTGAAGGCATTTTCTCTAGTAAATTGCTTGGGAATCAGGGATCTAAGCTTTGAAATACCTTCAAGGATACCTCATTGCAAATCTCTCCGATCCTTGTCCATCCGTAACTGCACTGGGTTCGGGAACACAAGCTTGGCTTTGCTCGGTAAGCTCTGCCCTCAACTAAAGGATGTGGAGTTGAGTGGGCTCGAGGGAATATCAGATTCTGGATTTTTCCCATTGATTGAGAACTGTGAATCGGGTTTGGTGAAGGTTAATCTCAGTGGTTGTGTGAATCTGACGGACAAGGTTGTTTCATCCATAACTGCCCATCATGGTTGGACTCTAGAAACACTTAATCTCGATGGTTGTAGGAAGATCACAGATGCAAGCTTGGTAGCAATTGCAGAGAGTTGCCCATTGCTGAATGATTTGGACATGTCTAAATGTGCCATTACAGACTTTGGGATCTTTGCCCTTGCTCAAGCCAATCAGTTCAATCTTCAGATCCTTTCTATTTCCGGTTGCTCTTTTGTATCAGAGAAGAGCTTGCCTGCTTTGATGAAATTGGGTTGGATGCTTGTGGGATTGAATCTTCAAAACTGCAAAGGATTCAATAGTGGAAATATTTCCCTCCTTATGGAGCAGCTTTGGAGGTGCGACATTCTTTCCTAA 2085 43.55 MEKIVMREEGHMPLHFHQGNRLYVGFYDFVALIYLMHPSNQAQFLFVSALIFVSFLLFALFGGFLGENLCRFDLPGFLELFPCQSSLVLPFQGVTIFSPGVQYTQIPSEEILEPKEEVSIDVLPDECLFEIFRRLPTGPERSASACVSKRWLMLLSNIRGDELCGPTPTQLFQPNDEIESQSCLSRNLEGKQATDVRLAAISVGRTACQGGLGKLLIRGSNHDRRVTDVGLRAIAKGCPSLKVLSLWNLFSIGDDGLCQIANGCHLLEKLDICRCPAISNKALLDLAKNCPSLTDITIESCPKIGDEGILALGKHCPNLKSVSIKNCPLVGDQGIVGLISSTSYVLNKLKLHGLNITDVSLAVIGHYGKSVTDLFLSGLMNISERGLWVMGNGYGLQKLKSLTIAFCHGVTNIGIEALGKGSPNLKQFCLDSGPLLSDTGLISFAKAAKSLEILQLEECHGITEFGFFSALLNCGAKLKAFSLVNCLGIRDLSFEIPSRIPHCKSLRSLSIRNCTGFGNTSLALLGKLCPQLKDVELSGLEGISDSGFFPLIENCESGLVKVNLSGCVNLTDKVVSSITAHHGWTLETLNLDGCRKITDASLVAIAESCPLLNDLDMSKCAITDFGIFALAQANQFNLQILSISGCSFVSEKSLPALMKLGWMLVGLNLQNCKGFNSGNISLLMEQLWRCDILS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13006921 13010035 - Conep04aG0184200.1 Cone4ag1785 436763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1785 694 FunFam EIN3-binding F-box protein 1 555 692 - -
Cone4ag1785 694 FunFam EIN3-binding F-box protein 1 183 302 - -
Cone4ag1785 694 SUPERFAMILY F-box domain 109 156 IPR036047 GO:0005515(InterPro)
Cone4ag1785 694 Gene3D - 113 159 - -
Cone4ag1785 694 PANTHER UNCHARACTERIZED 122 312 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Cone4ag1785 694 Gene3D Ribonuclease Inhibitor 183 300 IPR032675 -
Cone4ag1785 694 Gene3D Ribonuclease Inhibitor 301 490 IPR032675 -
Cone4ag1785 694 SMART fbox_2 123 163 IPR001810 GO:0005515(InterPro)
Cone4ag1785 694 CDD F-box_AtTIR1-like 120 159 - -
Cone4ag1785 694 SUPERFAMILY RNI-like 348 693 - -
Cone4ag1785 694 SUPERFAMILY RNI-like 224 466 - -
Cone4ag1785 694 Gene3D Ribonuclease Inhibitor 495 694 IPR032675 -
Cone4ag1785 694 FunFam EIN3-binding F-box protein 1 119 156 - -
Cone4ag1785 694 FunFam EIN3-binding F-box protein 1 303 493 - -
Cone4ag1785 694 Pfam Leucine Rich repeat 609 631 IPR001611 GO:0005515(InterPro)
Cone4ag1785 694 Pfam Leucine Rich repeat 585 606 IPR001611 GO:0005515(InterPro)
Cone4ag1785 694 Pfam Leucine Rich repeat 289 312 IPR001611 GO:0005515(InterPro)
Cone4ag1785 694 SMART LRR_CC_2 264 289 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 396 421 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 609 633 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 316 341 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 635 660 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 422 447 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 290 315 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 529 554 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 503 528 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 583 608 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 238 263 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 448 473 IPR006553 -
Cone4ag1785 694 SMART LRR_CC_2 556 581 IPR006553 -
Cone4ag1785 694 Pfam F-box domain 122 157 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1785 K14515 - - csv:101216639 798.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1021 Cone-Chr17:7783405 Cone4ag1785 Cone-Chr4:13006921 6.67E-157 dispersed
Cone2ag0229 Cone-Chr2:1211852 Cone4ag1785 Cone-Chr4:13006921 3.33E-87 dispersed
Cone4ag0669 Cone-Chr4:3309975 Cone4ag1785 Cone-Chr4:13006921 1.87E-141 dispersed
Cone4ag1785 Cone-Chr4:13006921 Cone7ag1700 Cone-Chr7:11334316 4.60E-295 dispersed
Cone4ag1785 Cone-Chr4:13006921 Cone4ag1791 Cone-Chr4:13034508 0 proximal
Cone16ag0815 Cone-Chr16:8860617 Cone4ag1785 Cone-Chr4:13006921 2.78E-101 wgd
Cone20ag0670 Cone-Chr20:4096152 Cone4ag1785 Cone-Chr4:13006921 1.06E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029822 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2