Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1792 ATGGTTCATTCAAGGAAGTTTAGAGGCGTCAGACAGCGTCAGTGGGGCTCTTGGGTGTCAGAGATTCGACACCCTTTACTGAAGAGGAGGGTTTGGCTGGGTACATTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGATCAAGCATCGATCTTAATGAACGGTCAAAATGCGAAGACTAATTTTCCCAATTCAAAGAATCAACCACATGAGCATGATGATCAGCATCATCATCACCATCATCTTGTAGGTCGAGGAGGAGATCATGATAAAATCAGATCATCATCAGATAATGGGTCCTCGCGGCCATTGATGTCCGCGAAGGAGCTTTCAGAGCTGCTCAGTACAAAGCTTAAGAAATGCTGCAAAGACCCTTCTCCTTCTCTTACCTGCTTGAGGCTCGACAGTGACAACTCTCACATAGGAGTCTGGCAGAAGCGGGCCGGTGCCTGCGGTTCTAATTGGGTCATGAGGATCGAGCTCGGAACGAAAAAGATGATGACTCCTCGCGATCAATTCGGTGATTCGTCCGTTGAGGACGCTACATCGTCGTTTTTACCAGTACTGGAAGGTGATAACAATACTAACACAGTACAGACAGAATCTGAAAATATTAAGATGAACGAAGAAGACAGAGTTGCGTTGCAGATGATCGAGGAATTGCTCAACTGGAATGAATCATCCTGA 687 46.29 MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQASILMNGQNAKTNFPNSKNQPHEHDDQHHHHHHLVGRGGDHDKIRSSSDNGSSRPLMSAKELSELLSTKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKRAGACGSNWVMRIELGTKKMMTPRDQFGDSSVEDATSSFLPVLEGDNNTNTVQTESENIKMNEEDRVALQMIEELLNWNESS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13040697 13041570 + Conep04aG0185000.1 Cone4ag1792 436770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1792 228 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1792 228 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1792 228 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1792 228 MobiDBLite consensus disorder prediction 56 106 - -
Cone4ag1792 228 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1792 228 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cone4ag1792 228 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 160 IPR050913 -
Cone4ag1792 228 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1792 228 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Cone4ag1792 228 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1792 228 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1792 228 MobiDBLite consensus disorder prediction 66 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0813 Cone-Chr16:8830663 Cone4ag1792 Cone-Chr4:13040697 5.86E-58 dispersed
Cone4ag1792 Cone-Chr4:13040697 Cone7ag1675 Cone-Chr7:11230679 2.27E-24 dispersed
Cone4ag1786 Cone-Chr4:13012589 Cone4ag1792 Cone-Chr4:13040697 2.50E-157 proximal
Cone16ag0650 Cone-Chr16:8006738 Cone4ag1792 Cone-Chr4:13040697 4.74E-62 wgd
Cone20ag0368 Cone-Chr20:1675514 Cone4ag1792 Cone-Chr4:13040697 4.67E-17 wgd
Cone4ag1792 Cone-Chr4:13040697 Cone7ag1701 Cone-Chr7:11339494 1.95E-134 wgd
Cone4ag1792 Cone-Chr4:13040697 Cone7ag0635 Cone-Chr7:3242891 2.00E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46053 PF13855 LRR_8 8.10E-10 CL0022 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1792 - - - 0.0