Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1792 | ATGGTTCATTCAAGGAAGTTTAGAGGCGTCAGACAGCGTCAGTGGGGCTCTTGGGTGTCAGAGATTCGACACCCTTTACTGAAGAGGAGGGTTTGGCTGGGTACATTTGAGACAGCAGAGGCAGCAGCAAGAGCATATGATCAAGCATCGATCTTAATGAACGGTCAAAATGCGAAGACTAATTTTCCCAATTCAAAGAATCAACCACATGAGCATGATGATCAGCATCATCATCACCATCATCTTGTAGGTCGAGGAGGAGATCATGATAAAATCAGATCATCATCAGATAATGGGTCCTCGCGGCCATTGATGTCCGCGAAGGAGCTTTCAGAGCTGCTCAGTACAAAGCTTAAGAAATGCTGCAAAGACCCTTCTCCTTCTCTTACCTGCTTGAGGCTCGACAGTGACAACTCTCACATAGGAGTCTGGCAGAAGCGGGCCGGTGCCTGCGGTTCTAATTGGGTCATGAGGATCGAGCTCGGAACGAAAAAGATGATGACTCCTCGCGATCAATTCGGTGATTCGTCCGTTGAGGACGCTACATCGTCGTTTTTACCAGTACTGGAAGGTGATAACAATACTAACACAGTACAGACAGAATCTGAAAATATTAAGATGAACGAAGAAGACAGAGTTGCGTTGCAGATGATCGAGGAATTGCTCAACTGGAATGAATCATCCTGA | 687 | 46.29 | MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQASILMNGQNAKTNFPNSKNQPHEHDDQHHHHHHLVGRGGDHDKIRSSSDNGSSRPLMSAKELSELLSTKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKRAGACGSNWVMRIELGTKKMMTPRDQFGDSSVEDATSSFLPVLEGDNNTNTVQTESENIKMNEEDRVALQMIEELLNWNESS | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13040697 | 13041570 | + | Conep04aG0185000.1 | Cone4ag1792 | 436770 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1792 | 228 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1792 | 228 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1792 | 228 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1792 | 228 | MobiDBLite | consensus disorder prediction | 56 | 106 | - | - | |
Cone4ag1792 | 228 | Gene3D | AP2/ERF domain | 5 | 64 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1792 | 228 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Cone4ag1792 | 228 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 160 | IPR050913 | - | |
Cone4ag1792 | 228 | CDD | AP2 | 6 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1792 | 228 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677(InterPro) | |
Cone4ag1792 | 228 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1792 | 228 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1792 | 228 | MobiDBLite | consensus disorder prediction | 66 | 96 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag0813 | Cone-Chr16:8830663 | Cone4ag1792 | Cone-Chr4:13040697 | 5.86E-58 | dispersed | |
Cone4ag1792 | Cone-Chr4:13040697 | Cone7ag1675 | Cone-Chr7:11230679 | 2.27E-24 | dispersed | |
Cone4ag1786 | Cone-Chr4:13012589 | Cone4ag1792 | Cone-Chr4:13040697 | 2.50E-157 | proximal | |
Cone16ag0650 | Cone-Chr16:8006738 | Cone4ag1792 | Cone-Chr4:13040697 | 4.74E-62 | wgd | |
Cone20ag0368 | Cone-Chr20:1675514 | Cone4ag1792 | Cone-Chr4:13040697 | 4.67E-17 | wgd | |
Cone4ag1792 | Cone-Chr4:13040697 | Cone7ag1701 | Cone-Chr7:11339494 | 1.95E-134 | wgd | |
Cone4ag1792 | Cone-Chr4:13040697 | Cone7ag0635 | Cone-Chr7:3242891 | 2.00E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46053 | PF13855 | LRR_8 | 8.10E-10 | CL0022 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1792 | - | - | - | 0.0 |