Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1795 | ATGGGAGAGACAAGAGATAACGAGTACGAGGAAGAGCTTCTCGACTACGAAGAAGAGGAAGAGAAGGTTCCTGATGCTGCTGGGGCCAAAGTTAATGGGGAAGCCGGCAAGAAGGGTTATGTGGGGATTCACAGTTCAGGATTCAGAGACTTCCTTTTGAAGCCAGAGCTTCTCCGAGCTATTGTGGACTCTGGGTTTGAGCATCCTTCTGAAGTTCAACATGAATGTATTCCTCAAGCTATCCTCGGCATGGATGTCATTTGTCAAGCGAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTCTCAAGCCTGCAGCAGATTGACCCAGTAGTGGGCCAAGTGTCAGCTCTTGTTCTATGTCATACAAGGGAGTTAGCATACCAGATCTGTCATGAGTTTGAGAGGTTCAGCACATACTTGCCCGATCTCAAGGTTGCTGTCTTTTATGGTGGTGTAAACGTAAAAATTCACAAGGACCTGCTAAAAAATGAATGTCCTCATATTGTTGTTGGAACTCCTGGGAGAATACTAGCATTAGCAAGAGATAAAGAACTTTCCTTGAAGAATATTAGGCATTTTATACTGGATGAATGTGACAAGATGCTTGAGTCGCTTGACATGAGGAGAGATGTGCAGGAGATTTTCAAGATGACCCCCCATGATAAGCAAGTTATGATGTTTTCTGCGACACTAAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGACGATGAGGCAAAGTTGACCTTGCATGGGCTTGTGCAGCACTACATCAAATTAAGCGAGATGGAGAAAAATCGCAAGTTGAATGACCTACTTGATGCATTGGACTTCAATCAAGTTGTAATTTTTGTGAAAAGTGTGAGCAGAGCTGCCGAGCTAGATAAGTTACTAGTGGAATGCAATTTCCCCTCGATTTGCATACATTCTGGCATGCCCCAGGAAGAAAGGTTGACGCGTTACAAAGGATTCAAGGAGGGACATAAGAGGATTCTTGTTGCCACTGATTTGGTCGGCAGGGGTATTGACATTGAAAGAGTGAATATTGTCATCAACTATGACATGCCAGATTCTGCGGATACTTACCTACATAGGGTTGGTAGAGCTGGTAGGTTTGGTACCAAGGGCCTTGCCATTACTTTTGTATCATCTGCATCCGATTCAGATGTTCTCAATAATGTACAAGAAAGGTTTGAAGTGGATATAAAAGAGCTCCCTGAGCAGATTGATACCTCTACTTACATGCCATCTTAG | 1284 | 43.15 | MGETRDNEYEEELLDYEEEEEKVPDAAGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVVGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILALARDKELSLKNIRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNNVQERFEVDIKELPEQIDTSTYMPS | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13049544 | 13053253 | + | Conep04aG0185400.1 | Cone4ag1795 | 436773 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1795 | 427 | Pfam | Helicase conserved C-terminal domain | 275 | 383 | IPR001650 | - | |
Cone4ag1795 | 427 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 115 | 397 | IPR027417 | - | |
Cone4ag1795 | 427 | CDD | DEADc_DDX39 | 45 | 252 | - | - | |
Cone4ag1795 | 427 | Pfam | DEAD/DEAH box helicase | 71 | 236 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Cone4ag1795 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 278 | 423 | IPR001650 | - | |
Cone4ag1795 | 427 | SMART | helicmild6 | 302 | 383 | IPR001650 | - | |
Cone4ag1795 | 427 | CDD | SF2_C_DEAD | 263 | 392 | - | - | |
Cone4ag1795 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 250 | IPR014001 | - | |
Cone4ag1795 | 427 | FunFam | DEAD-box ATP-dependent RNA helicase | 259 | 427 | - | - | |
Cone4ag1795 | 427 | SMART | ultradead3 | 65 | 266 | IPR014001 | - | |
Cone4ag1795 | 427 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 46 | 410 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Cone4ag1795 | 427 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cone4ag1795 | 427 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 46 | 74 | IPR014014 | GO:0003724(InterPro) | |
Cone4ag1795 | 427 | Gene3D | - | 259 | 426 | IPR027417 | - | |
Cone4ag1795 | 427 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 34 | 252 | - | - | |
Cone4ag1795 | 427 | Gene3D | - | 42 | 258 | IPR027417 | - | |
Cone4ag1795 | 427 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0668 | Cone-Chr20:4070735 | Cone4ag1795 | Cone-Chr4:13049544 | 1.05E-306 | dispersed | |
Cone4ag1795 | Cone-Chr4:13049544 | Cone7ag1231 | Cone-Chr7:9130316 | 3.79E-75 | dispersed | |
Cone4ag1789 | Cone-Chr4:13021951 | Cone4ag1795 | Cone-Chr4:13049544 | 1.45e-313 | proximal | |
Cone17ag1024 | Cone-Chr17:7798673 | Cone4ag1795 | Cone-Chr4:13049544 | 1.87E-300 | wgd | |
Cone4ag1795 | Cone-Chr4:13049544 | Cone7ag1703 | Cone-Chr7:11349120 | 6.88e-312 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1795 | K12812 | - | csv:101217346 | 808.135 |