Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1800 ATGGAAGCAAATGCGGGAATGGTGGCTGGATCTTACAAGAGGAACGAGCTCGTTCGGATTCGCCATGATTCTGATAGTGGGCCCAAACCGTTGAAGCATTTGAATGGGCAAATATGTCAGATATGTGGCGATACAGTTGGACTTACGGTCAATGGAGAGGTGTTTGTTGCTTGCAATGAATGTGCTTTCCCTGTCTGTAGGCCTTGTTACGAGTACGAGCGAAAAGAAGGCAATCAGTCGTGCCCCCAGTGCAAGACTAGATATAAAAGGCACAAAGGGAGTCCTCGAGTTGATGGTGATGATGATGAGGATGATGTTGATGATATTGAGAATGAGTTCAATTATGGTCAAGGTAATATCAAGGCAAGAAGGCAATGGCAGGGAGAAGATGATCTCTCTTCTTCTGCGAGGCACGAGTCTCAACAACCAATCCCTCTTCTCACAAACGGGCAACCTGTGTCAGGTGAATTTCCCTGTGTTACACCCGACAACCAATCTGTGAGAACTACATCGGGTCCTTTGGGTCCTTCTGAAAAGCATTCCCATTCGCCTTATATTGATCCGAGGCAGCCAGTTCCTGTGAGAATTGTGGACCCATCAAAGGACTTGAACTCCTATGGCCTTGGAAATGTTGACTGGAAGGAAAGAGTCGAAGGTTGGAAACTCAAACAGGATAAGAACATAATGAACATGACGACTAGGTACTCTGAAGGAAAAGGAGGTGATATTGAAGGCACTGGATCAAATGGAGAAGAACTCCAAATGGCTGATGATGCTAGACAACCTTTGAGCCGAATAGTTCCTATTGACTCTTCTCAACTGACCCCATATCGGGTTGTGATCATACTGCGTCTAATTATCCTTGGCTTCTTCCTTCAATATCGTGTTACACACCCTGTGAAGGATGCTTACCCTTTATGGTTAACATCTGTTATTTGTGAGATTTGGTTCGCCTTATCCTGGCTCCTCGATCAATTCCCAAAATGGTATCCCATCAATAGAGAGACCTATCTAGACCGGCTCACATTGAGATATGATAGGGATGGAGAGCCATCTCAATTAGCTCCTGTGGATGTTTTTGTTAGTACAGTGGACCCGCTAAAAGAGCCTCCTCTTGTGACGGCAAATACTGTTCTTTCCATACTTGCTGTGGATTACCCAGTTGACAAGGTCTCTTGCTATGTATCAGATGATGGGTCAGCAATGTTGACTTTTGAAGCCCTATCTGAAACTGCAGAATTTGCTAGGAAGTGGGTTCCCTTTTGCAAGAAGTACAACATTGAGCCAAGGGCACCTGAGTTTTATTTTCAACAGAAAATAGACTATTTGAAGGACAAGATACAACCTTCTTTTGTCAAAGAGCGTCGAGCAATGAAGAGGGAGTATGAAGAATTCAAGGTTCGGACAAATGCTCTTGTAGCCAAAGCACAGAAGATGCCTGAAGAAGGTTGGACTATGCAGGATGGCACTCCTTGGCCTGGAAATAATCCTAGGGATCATCCAGGAATGATCCAGGTCTTTTTGGGCCATAGTGGTGGGCTTGATACTGATGGAAATGAACTACCTCGACTTGTTTATGTTTCTCGTGAGAAGCGACCTGGCTTCCAGCATCACAAGAAGGCCGGAGCTATGAATGCTTTGATTCGAGTTTCAGCTGTTCTTACCAATGGAGCTTATCTTTTGAACGTGGATTGTGATCACTACTTTAATAACAGCAAAGCTCTCAAAGAAGCCATGTGTTTCATGATGGACCCCGCCTATGGAAAGAAGACATGCTATGTCCAGTTCCCACAGCGTTTCGATGGCATCGATTTGCACGATCGATATGCCAATCGCAATATCGTCTTCTTTGATATCAACTTGAAAGGGTTGGATGGCATTCAAGGTCCTGTCTATGTGGGAACTGGTTGTTGTTTCAACAGGCAAGCTCTATATGGGTATGATCCTGTTTTGACCGAGGAAGATTTGGAACCAAACATTGTACTTAAGAGCTGTTGTGGTCCAAGGAAGAAGAGTAGGGGTGGCAATAAGAAGTACATTGACAAAAAGAGGGCTGCCAAAAGAACCGAATCCACCATCCCCATCTTTAACATGGAAGATATTGAAGAGGGAGTAGAAGGATATGATGATGAGAGATCACTCCTCATGTCTCAGAAGAGCTTAGAGAAGCGATTCGGACAATCTCCTGTTTTTATTGCTGCCACTTTCATGGAACAAGGAGGCCTTCCACCTTCAACCAATCCCACTACTCTTCTAAAGGAAGCCATCCATGTTATCAGCTGTGGATATGAAGACAAAACTGAGTGGGGAAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTAACCGGATTTAAAATGCATGCTCGTGGTTGGATTTCAATCTACTGCATGCCGCCTCGGCCTGCATTCAAAGGGTCCGCCCCCATAAATCTTTCTGATCGTTTGAACCAAGTGCTTCGATGGGCTTTGGGCTCAATTGAGATCTTGCTTAGCAGGCATTGCCCCATATGGTACGGCTACCAAGGAAAACTAAGGCTTCTGGAGAGACTAGCTTACATCAATACTATAGTCTACCCTCTTACCTCCATTCCACTACTTGCATATTGTACTCTTCCTGCTTTCTGCCTCTTAACCAATAAATTCATCATCCCAGAGATAAGCAACTATGCTAGTATGTGGTTTATCCTTCTCTTTATCTCTATTTTTGCAACGGGTATTCTTGAGCTTAGATGGAGTGGAGTTAGTATCGAAGACTGGTGGAGAAATGAACAGTTTTGGGTCATTGGAGGTACTTCAGCCCATCTCTTTGCCGTTTTCCAAGGGCTCTTAAAAGTACTTGCCGGAATTGACACCAACTTCACTGTCACCTCAAAAGCATCAGATGATGATGGGGACTTTGCCGAGCTTTATGTGTTCAAATGGACCGCTCTTCTGATCCCACCCACCACTGTTCTTCTCATGAACATAGTGGGTATTGTGGCAGGTGTTTCTTATGCTATAAATAGCGGGTACCAGTCGTGGGGTCCCCTTTTCGGTAAACTGTTCTTTGCCATGTGGGTCGTTGTGCATTTGTATCCCTTCTTGAAGGGTTTGTTGGGACGTCAAAACCGTACCCCAACAATTGTTATCGTGTGGTCCATTCTTCTGGCTTCGATCTTCTCGTTGCTTTGGGTTCGGATCGATCCCTTTACTTCCGGGACCAATACAGCTTCTGCAGGTCAATGCGGGGTCAATTGCTAA 3252 44.74 MEANAGMVAGSYKRNELVRIRHDSDSGPKPLKHLNGQICQICGDTVGLTVNGEVFVACNECAFPVCRPCYEYERKEGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYGQGNIKARRQWQGEDDLSSSARHESQQPIPLLTNGQPVSGEFPCVTPDNQSVRTTSGPLGPSEKHSHSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNIMNMTTRYSEGKGGDIEGTGSNGEELQMADDARQPLSRIVPIDSSQLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLTLRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKYNIEPRAPEFYFQQKIDYLKDKIQPSFVKERRAMKREYEEFKVRTNALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIVLKSCCGPRKKSRGGNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGLPPSTNPTTLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYQGKLRLLERLAYINTIVYPLTSIPLLAYCTLPAFCLLTNKFIIPEISNYASMWFILLFISIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTALLIPPTTVLLMNIVGIVAGVSYAINSGYQSWGPLFGKLFFAMWVVVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSGTNTASAGQCGVNC 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13064719 13070213 - Conep04aG0185900.1 Cone4ag1800 436778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1800 1083 Pfam Cellulose synthase 357 1074 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone4ag1800 1083 FunFam Cellulose synthase 21 112 - -
Cone4ag1800 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cone4ag1800 1083 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 657 IPR029044 -
Cone4ag1800 1083 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 277 1052 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone4ag1800 1083 CDD mRING-HC-C4C4_CesA 37 87 - -
Cone4ag1800 1083 FunFam Cellulose synthase 474 648 - -
Cone4ag1800 1083 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 345 439 IPR029044 -
Cone4ag1800 1083 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 663 IPR029044 -
Cone4ag1800 1083 MobiDBLite consensus disorder prediction 137 177 - -
Cone4ag1800 1083 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cone4ag1800 1083 MobiDBLite consensus disorder prediction 81 105 - -
Cone4ag1800 1083 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Cone4ag1800 1083 MobiDBLite consensus disorder prediction 119 192 - -
Cone4ag1800 1083 SUPERFAMILY RING/U-box 22 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0058 Cone-Chr3:348716 Cone4ag1800 Cone-Chr4:13064719 0 dispersed
Cone4ag0586 Cone-Chr4:2691877 Cone4ag1800 Cone-Chr4:13064719 0 dispersed
Cone4ag1800 Cone-Chr4:13064719 Cone6ag1303 Cone-Chr6:10472077 0 dispersed
Cone4ag1800 Cone-Chr4:13064719 Cone7ag1708 Cone-Chr7:11366195 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1800 K10999 - vvi:100254408 2097.78