Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1802 ATGCAGGAGCAAGCAACAAGCTCCATTGCTGCTAGCTCTTTGCCTTCTAGCAGTGAAAGATCTTCAAGCTCCGCGCTTCAACTTGAAGTCAAAGAAGGTATCGAGAGTGATGAGGAGATCAGGAGAGTGCCGGAGATCGGCGGGGAATCAGCGGGGACTTCAGCCTCCGGAAGAGACGCCGGTTCAGTAGCCGGTCCAGACCGGGTTCAAGTCTCGGGTGAAGGTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAGGAAAGCAAGAGGCTCAAGAGATTATTGAGAAACAGAGTATCAGCACAACAAGCAAGGGAGAGGAAAAAGGTGTACGTGAATGACTTGGAAATTAGAGTGAAAGACCTGGAGAAAAAGAACTCTGAGCTTGAAGAAAAGTTATCTACATTACAGAATGAGAATCAGATGCTTAGACATATATTAAAGAACACAACAGCGAGCAGGAGAAGTGGGAGTAGTGGTACCAATGCGGATGGATCTCTATAG 504 47.62 MQEQATSSIAASSLPSSSERSSSSALQLEVKEGIESDEEIRRVPEIGGESAGTSASGRDAGSVAGPDRVQVSGEGQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKVYVNDLEIRVKDLEKKNSELEEKLSTLQNENQMLRHILKNTTASRRSGSSGTNADGSL 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13085243 13087089 - Conep04aG0186100.1 Cone4ag1802 436780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1802 167 Gene3D Single helix bin 108 149 - -
Cone4ag1802 167 SMART brlzneu 85 149 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1802 167 MobiDBLite consensus disorder prediction 148 167 - -
Cone4ag1802 167 CDD bZIP_HY5-like 90 141 - -
Cone4ag1802 167 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 92 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1802 167 MobiDBLite consensus disorder prediction 31 45 - -
Cone4ag1802 167 MobiDBLite consensus disorder prediction 1 107 - -
Cone4ag1802 167 MobiDBLite consensus disorder prediction 1 29 - -
Cone4ag1802 167 FunFam Transcription factor HY5 108 149 - -
Cone4ag1802 167 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 150 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1802 167 MobiDBLite consensus disorder prediction 72 107 - -
Cone4ag1802 167 Pfam bZIP transcription factor 86 146 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1802 167 Coils Coil 84 146 - -
Cone4ag1802 167 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 160 IPR044280 GO:0000981(InterPro)|GO:0005634(PANTHER)|GO:0010017(PANTHER)|GO:0010099(PANTHER)|GO:0010114(PANTHER)|GO:0010218(PANTHER)|GO:0045944(InterPro)
Cone4ag1802 167 SUPERFAMILY Leucine zipper domain 89 147 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0667 Cone-Chr20:4061620 Cone4ag1802 Cone-Chr4:13085243 1.87E-47 dispersed
Cone17ag1030 Cone-Chr17:7817731 Cone4ag1802 Cone-Chr4:13085243 2.37E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46054 PF06645 SPC12 7.20E-07 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1802 K16241 - rcu:8259475 239.965