Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1802 | ATGCAGGAGCAAGCAACAAGCTCCATTGCTGCTAGCTCTTTGCCTTCTAGCAGTGAAAGATCTTCAAGCTCCGCGCTTCAACTTGAAGTCAAAGAAGGTATCGAGAGTGATGAGGAGATCAGGAGAGTGCCGGAGATCGGCGGGGAATCAGCGGGGACTTCAGCCTCCGGAAGAGACGCCGGTTCAGTAGCCGGTCCAGACCGGGTTCAAGTCTCGGGTGAAGGTCAAAGGAAGAGAGGAAGAAGCCCAGCTGACAAGGAAAGCAAGAGGCTCAAGAGATTATTGAGAAACAGAGTATCAGCACAACAAGCAAGGGAGAGGAAAAAGGTGTACGTGAATGACTTGGAAATTAGAGTGAAAGACCTGGAGAAAAAGAACTCTGAGCTTGAAGAAAAGTTATCTACATTACAGAATGAGAATCAGATGCTTAGACATATATTAAAGAACACAACAGCGAGCAGGAGAAGTGGGAGTAGTGGTACCAATGCGGATGGATCTCTATAG | 504 | 47.62 | MQEQATSSIAASSLPSSSERSSSSALQLEVKEGIESDEEIRRVPEIGGESAGTSASGRDAGSVAGPDRVQVSGEGQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKVYVNDLEIRVKDLEKKNSELEEKLSTLQNENQMLRHILKNTTASRRSGSSGTNADGSL | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13085243 | 13087089 | - | Conep04aG0186100.1 | Cone4ag1802 | 436780 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1802 | 167 | Gene3D | Single helix bin | 108 | 149 | - | - | |
Cone4ag1802 | 167 | SMART | brlzneu | 85 | 149 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1802 | 167 | MobiDBLite | consensus disorder prediction | 148 | 167 | - | - | |
Cone4ag1802 | 167 | CDD | bZIP_HY5-like | 90 | 141 | - | - | |
Cone4ag1802 | 167 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 92 | 107 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1802 | 167 | MobiDBLite | consensus disorder prediction | 31 | 45 | - | - | |
Cone4ag1802 | 167 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
Cone4ag1802 | 167 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cone4ag1802 | 167 | FunFam | Transcription factor HY5 | 108 | 149 | - | - | |
Cone4ag1802 | 167 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 150 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1802 | 167 | MobiDBLite | consensus disorder prediction | 72 | 107 | - | - | |
Cone4ag1802 | 167 | Pfam | bZIP transcription factor | 86 | 146 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1802 | 167 | Coils | Coil | 84 | 146 | - | - | |
Cone4ag1802 | 167 | PANTHER | TRANSCRIPTIONAL ACTIVATOR HAC1 | 1 | 160 | IPR044280 | GO:0000981(InterPro)|GO:0005634(PANTHER)|GO:0010017(PANTHER)|GO:0010099(PANTHER)|GO:0010114(PANTHER)|GO:0010218(PANTHER)|GO:0045944(InterPro) | |
Cone4ag1802 | 167 | SUPERFAMILY | Leucine zipper domain | 89 | 147 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0667 | Cone-Chr20:4061620 | Cone4ag1802 | Cone-Chr4:13085243 | 1.87E-47 | dispersed | |
Cone17ag1030 | Cone-Chr17:7817731 | Cone4ag1802 | Cone-Chr4:13085243 | 2.37E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46054 | PF06645 | SPC12 | 7.20E-07 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1802 | K16241 | - | rcu:8259475 | 239.965 |