Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1806 ATGGCAAAGAAGAACCTTTTTGTTTTTATGGATGTATCCATTGATGGCGATCCCATTGAAAGAATGGTTTTTGAGCTTTTCTATGATGTTGCTCCTAAGACTGCAGAAAATTTTCGTGCACTCTGTACAGGAGAAAAGGGAGTAGGTCCTAAAAGTGGAAGGGTACTACACTACAAAGGATCTTTTTTCCATCGCATTATTAAAGGCTCTATAGTGCAGGGTGGTGATTTCATCAAACGAGATGGGACTGTTGGAGAAAGCATATATGGAGGGAAGTTTCCAGATGAAACACCCCGACTAAAACATGATGAAACTGGTCTTTTATCTATGGCTATCGCTGACCGTGACACCTTAGGTTCTCATTTCCTCATCACCTTTAAGGCTAATCACCATCTTGACAGGAAGTGTGTAGTATTCGGAAAGCTTGTTCGAGGACTTGAAGTATTAAAAAAGATTGAAAACTTCGGTGATGAAGATGGGACTCCAACAGTAACAGTGAAAATCATCAATTGTGGTGAATATAATGAGGACAAAAGGAAAATCAAAGCAAGAATGAAAAAGGATTCTTCGGATGAAGATGATGGTTATGAAGCAAAGAGGAAGGACAATCACAAAAAATCTTCAAGAGAGAAAAGGAGAAAGAGAAGAAGATACTACATGTCCGAGTCAGATAGCTCTTCAGATAGTGAGTCAGACTCCTCAGATTCTGAGAGTGATTCTGACTCAGATTTATCCTCATCAGATGAAAGTTCTTCAAGTGATGACAGAACAAAGAAGCGAAAGAGATCCTCAAGAAGAGACAAATATAGGAGAAGTAAGAGAAGGGATAAAAGACGTGAAAAAAAGCGAATGAAGCATGATAGAAGATCTAAGCGCAAATCCAGAAGGGCATCGGATAGTCCTACTGATACTGATGAGAGTAAAAGCAAAAGTACTTCCAGCGATGATGGCCTTAATGTTCAGGCGAAAGACCACAAGTGTAAAGATTCTTCTAAGAAAAATGCTGTAAATCCTATGTCATCCCCAGAACAGAGGGAGGAAACAGATAGGACAGAGATAGATGGAGGAAGAATCCAGAAGGAAAATGGAGAGCGGCAGAGAAATGGCACTGTGAATTCGGATAAGTCTGACAGAAGTGCTGATAGAAAACCTGATGTAGTAGATGATCAAGGAAAATATAGGAACCGTAGCGGAAGTCCTAAAATCGCCATGAGTAAGAGTATGAGTACTACATCAGGGAAGAGTTTTAGCAAGAGCCCTAGTGTTGGCCCAAAACGAAGCGTGAGCGGGGGTAGGAGTGTCAGTGGAAGCCCCCCTCCTCCACTGAGAAGCAGAAGTATGGACAGAAGTCCTGTTAGGGGTGGTAGCAACAAGAGCCCATCCAGAAGCCTCAGCCGAAGTCCCATAGCAGGCAGAAAATGTAGAACCATAAGTAGAAGCCCGTCAAGAGCTAGGTCTCAAAGACGTGTTAGCCGGAGCCCAAGCCCTCTCAGGAGTCCCCTGAGAAGAAATACAAGAAGCCCGAGCAGAAGTCCTCCAAGGAGAAATGCAAGAAGCCTAAGCAGGAGCCCCCTAAGAAGAAATACGAGAAGCCCAAGCAGGAGTCTGCAAGGAAGAAATACCAGAAGCCCAAGCAGGAGCACACTGAGAAGGAATGCAAATAGCATAAGCAGGAGTCCAGTGCGATCTTCTCGCAGGAGCTTGAGCAGAAGCTCGGGTAGGGCCCCTTCAAGGAGAAGTATAAGCCGGAGTCCAGTACGGGCACCTATCAGAATTAGTCGTAGGAGCTATTCAAGGAGCCCTAGCTCTAGACGTCGGCCTAGATCACCCCCATCTAATCGAGTGAGGAGTGAATCAAGAAGTGTTTCTCCAGACGCATCCCCCAAGCGCATCAGGAGAGGGCGTGGTTTCAGTCAGCGTTATTCATATGCTCGCCGCTACAGAACCCCCTCTCTCTCTCCACCAAGGTCTTACCGTTATAATGGTAGAAGTGAACGTGACAGATATTCAAGCTACAGGAGGTATTCTCCTAGGCGTTATAGAAGCCCCCCAAGAGCAAGATCTCCTATAAGGTATAGAAGCAGGAGAAGCAGGACACCTTCTGTATCACGTAGCCCCCGTTACCATCACCATCACTACAGCCGGAGTCGTAGCCCTATCCGTAGTTGTTCTCCTGTTGAAGGTTCCAGTCTGGTGTCGCCTCCGGACGAGAAGCGGAGATCACTCTCCAGAAGCAGAAGCCCATCAAGGTCAAGGTCCCCTCCTTCTCGGTCTCAATCCCTCAGGCGGACTAGTAAAGATAGGGCAAGCTCATCTTCTAGAAGCCCGAATGGGAAGAAGGGCCTCGTATCTTATGGCGATGGTTCTCCCGACTCTTTCGATCAGTAA 2388 45.9 MAKKNLFVFMDVSIDGDPIERMVFELFYDVAPKTAENFRALCTGEKGVGPKSGRVLHYKGSFFHRIIKGSIVQGGDFIKRDGTVGESIYGGKFPDETPRLKHDETGLLSMAIADRDTLGSHFLITFKANHHLDRKCVVFGKLVRGLEVLKKIENFGDEDGTPTVTVKIINCGEYNEDKRKIKARMKKDSSDEDDGYEAKRKDNHKKSSREKRRKRRRYYMSESDSSSDSESDSSDSESDSDSDLSSSDESSSSDDRTKKRKRSSRRDKYRRSKRRDKRREKKRMKHDRRSKRKSRRASDSPTDTDESKSKSTSSDDGLNVQAKDHKCKDSSKKNAVNPMSSPEQREETDRTEIDGGRIQKENGERQRNGTVNSDKSDRSADRKPDVVDDQGKYRNRSGSPKIAMSKSMSTTSGKSFSKSPSVGPKRSVSGGRSVSGSPPPPLRSRSMDRSPVRGGSNKSPSRSLSRSPIAGRKCRTISRSPSRARSQRRVSRSPSPLRSPLRRNTRSPSRSPPRRNARSLSRSPLRRNTRSPSRSLQGRNTRSPSRSTLRRNANSISRSPVRSSRRSLSRSSGRAPSRRSISRSPVRAPIRISRRSYSRSPSSRRRPRSPPSNRVRSESRSVSPDASPKRIRRGRGFSQRYSYARRYRTPSLSPPRSYRYNGRSERDRYSSYRRYSPRRYRSPPRARSPIRYRSRRSRTPSVSRSPRYHHHHYSRSRSPIRSCSPVEGSSLVSPPDEKRRSLSRSRSPSRSRSPPSRSQSLRRTSKDRASSSSRSPNGKKGLVSYGDGSPDSFDQ 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13098215 13103991 - Conep04aG0186500.1 Cone4ag1806 436784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1806 795 MobiDBLite consensus disorder prediction 480 579 - -
Cone4ag1806 795 MobiDBLite consensus disorder prediction 343 395 - -
Cone4ag1806 795 MobiDBLite consensus disorder prediction 228 244 - -
Cone4ag1806 795 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 181 - -
Cone4ag1806 795 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 9 173 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone4ag1806 795 MobiDBLite consensus disorder prediction 603 622 - -
Cone4ag1806 795 Gene3D - 1 182 IPR029000 -
Cone4ag1806 795 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone4ag1806 795 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 26 41 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone4ag1806 795 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 63 75 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone4ag1806 795 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone4ag1806 795 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone4ag1806 795 MobiDBLite consensus disorder prediction 400 434 - -
Cone4ag1806 795 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 174 - -
Cone4ag1806 795 MobiDBLite consensus disorder prediction 181 795 - -
Cone4ag1806 795 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 172 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cone4ag1806 795 MobiDBLite consensus disorder prediction 678 717 - -
Cone4ag1806 795 MobiDBLite consensus disorder prediction 294 312 - -
Cone4ag1806 795 SUPERFAMILY Cyclophilin-like 5 178 IPR029000 -
Cone4ag1806 795 MobiDBLite consensus disorder prediction 181 204 - -
Cone4ag1806 795 MobiDBLite consensus disorder prediction 450 466 - -
Cone4ag1806 795 MobiDBLite consensus disorder prediction 261 293 - -
Cone4ag1806 795 MobiDBLite consensus disorder prediction 660 674 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1806 K09566 - - csv:101210345 515.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1806 Cone-Chr4:13098215 Cone8ag1151 Cone-Chr8:10037488 3.00E-52 dispersed
Cone4ag1806 Cone-Chr4:13098215 Cone7ag1714 Cone-Chr7:11397704 1.21E-192 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g446 . . . . Bpe02g01238 . . . Cmo05g00413 Cmo12g00276 . Cma05g00402 . Car12g00307 . Cpe07g00284 . Bhi04g00994 . . . Hepe10g0270 . . . . . . . . . Cone4ag1806 Cone7ag1714 . . . . . Cme03g01642 Blo17g00026 Blo18g00035 Bda01g00993 . . . Bma01g01285 Bma02g00030 . . . . Cma12g00325 . Car05g00336 Cpe11g00342 . . . . . . . . Cla08g01312 Cam08g1772 Cec08g1354 Cco08g1474 Clacu08g1468 . Cre08g1255 Lsi08g01176 . Chy03g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0053826 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1