Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1808 ATGAGAACTTCACTTACTACTCCACCAATCCATCCACACCTTCTCCGCTCCTTCTTAAACTCTAAATCCCTCACTTCACAGTCAGACATCCCCGTCTGGGAATCAAAAGATTCCCAGCATTCCGATCCAAACACTAGCTTTGCTGCTGAGAAAATATCTTCTAATCTCGAAGAAATCAAAGCTGAATATGAACGTCCTGCTAATCCATTTGTCTCGGAATCCAAACGCACATTCCTCAGCTACCCTTTTTCTCAGAAATCAGATTTGACGGAAAGCATAGTAATTGAAAATCTCCTAGACCGTAAGGGCGATCCAAAATCAGCTTTGGAATACTTCAAACGGGCTGAGCAAGAGCGAGGATTTGTCAAAAGCGTCGATGCCATTTGCATTCTGCTTCATATATTAACAAATCATCCTCAGGCTTGTGGGCAAGCTCGCAATTTGCTTAACCAGTTTGCATCCGGACGTTCAGGCCCCACTCCCGACCTCCATGTCGATCATTTGGTGGAGTGTACGGAAAGGTATGGTTTTGCAAAGGACCCAAAGGTTCTTAACTTCTTGTTGGATAGTTATGTAAGAGCCAATAGGACTGATGAGGCCATTGATTGTTTTAATAGAATGATAGAGTGTGATTTATTGCCTTGGGTTAGATATATGAATCATCTTTTGACCATCATGGTAAGGGGAAATATGAATGCTCAAGCACGAGAATTGCATAACAAGATGGTTCTGAGAGGAGTTGGAGGTGACAGCTATACTTTACATGTAATGATGCGCTCTTGTTTGAAAGAAGAAAAGGCTGAGGAGGCAGAAGAGTACTTCAAAGAAGCAAAAAATAGAAAATTGATGCTTGATCCTGCAGCTTATAGCATATATATTCAGGCTGTTTGTAAAAAACCAAATTCGAGATTAGCTTGTGAGATGTTAAAAGAGATGGAAGAAAAAGGGTGGGTTCCTTCTGAGGGTACCTTTACTAGTGTTGTCACAGCTTGTGTGAAGCAGAGGAATTTGGTAGAAGCACTTAGGATAAAGGATAAGATGGTTCATTCTGGTTACTCAATGAATTTGGTTGTTGCAACAAGTTTGATGAAGGGGTACCATGAGAAAGGAGATTTAAGTAGTGCTATGGATCTGTTCTATAAGATTAAAGAGTGTGGGCTTAATCCAAACAAGATTACATACTCAGTTTTGATAGATGGGTGTTGCAAAAATGACGACTTGGAAAAAGCTATGGAGCTTTACTTCCTAATGAAAAATGAGGGTATCGAGGCCAGTGTCTTTTCTTTGAATTCAATTATACGGGGATTGTTAAAATCTGGGTGTTGGAAAGAGGCATCCAAGTTGTTCGATGAGGCAGTTGATAGTGGTGTTGCTAACATTTTCACGTATAATAATATCCTGGCTTGGCTCTGTGAACAGGGTAAGGTGAACGAAGCTTCCACTTTTTGGGATAAGATGATGATGAGTAGAGGTGTGGTTCCAAATGTAGTTTCTTATAACAACATGATTCTTGGTCATTGCAGAAAAAGGAATATGGATATAGCATTTGATTTATATTCAGAGATGTGTGAAAGGGGATTAACACCAAATGTCATTACCTTTTCGATTTTGATTGATGGATATTTCAAGAGTGGTGATACTGACCATGCCGTTGATGTGTTTGACCAAATGATGGGTTACAAAATTACCCCAACAGATATCACAATCAATACTGTTATCAATGGACTGTGCAAAGCTGGTCGGACAGCGGAGGGAAAGCAAATGCTGGAGAATTTTTCCGAAAGGGGTTTCATTCCCATATCTAGAACTTACAATGCTATTATAGATGGGTATATCAAAGAGGGGTCCATTAATTCTGCTTTGGCTATTTATAGAGAAATGTGTGAGATTGGTATTTCTCCTAGTGTTGTCACATACACCACTTTGATTGATGGGTTTTGTAAAAGTCAGAACATTGATATTGCTTTGAAAATGCTGAATGAAATGAAACATAAGGGTCTTGAATTGGATGTTACTGCATATGGAACTCTTATTGACGCCTTTTGCAAGAGACGGGACATGAGAAATGCTAGTAAGTTTCTCTCTGAACTCTTTGTAGTCGGTTTATCTCCAAATACCGTCATTTATAATTCCGTTATTAGTGGCTTCAAGAATGTGAATAACTTAGAAGCAGCCCTTGATATGCATAAGAAAATGATAAGAGATGGTGTAGCTTGTGATTTGCTAACCTATACCACATTAATCGACGGATATCTCAAAGACGGCAAATTACAATTTGCATCTGATCTATACTCAGAGATGCTCTCTAAGGGAATTGTTCCCGATGACATCACATACACTGCTCTGATCCATGGCCTTTGTAACAAAGGACAGCTAGAGAATGCGCAGAAGATTCTAGAAGAGATGGATCTAAAGGGCACGACTCCTAATGTTCTTATATATAACATTTTGATAGCTGGACAATTCAAGGCCGGGAATTTAGAAGAGGCGTTTAGACTGCATGATGAGATGCTTGATAGAGGTCTTGAACCTGATAACACTACTTACGACATTCTTGTGTGCGGACAAAAAGTTTAA 2577 39.46 MRTSLTTPPIHPHLLRSFLNSKSLTSQSDIPVWESKDSQHSDPNTSFAAEKISSNLEEIKAEYERPANPFVSESKRTFLSYPFSQKSDLTESIVIENLLDRKGDPKSALEYFKRAEQERGFVKSVDAICILLHILTNHPQACGQARNLLNQFASGRSGPTPDLHVDHLVECTERYGFAKDPKVLNFLLDSYVRANRTDEAIDCFNRMIECDLLPWVRYMNHLLTIMVRGNMNAQARELHNKMVLRGVGGDSYTLHVMMRSCLKEEKAEEAEEYFKEAKNRKLMLDPAAYSIYIQAVCKKPNSRLACEMLKEMEEKGWVPSEGTFTSVVTACVKQRNLVEALRIKDKMVHSGYSMNLVVATSLMKGYHEKGDLSSAMDLFYKIKECGLNPNKITYSVLIDGCCKNDDLEKAMELYFLMKNEGIEASVFSLNSIIRGLLKSGCWKEASKLFDEAVDSGVANIFTYNNILAWLCEQGKVNEASTFWDKMMMSRGVVPNVVSYNNMILGHCRKRNMDIAFDLYSEMCERGLTPNVITFSILIDGYFKSGDTDHAVDVFDQMMGYKITPTDITINTVINGLCKAGRTAEGKQMLENFSERGFIPISRTYNAIIDGYIKEGSINSALAIYREMCEIGISPSVVTYTTLIDGFCKSQNIDIALKMLNEMKHKGLELDVTAYGTLIDAFCKRRDMRNASKFLSELFVVGLSPNTVIYNSVISGFKNVNNLEAALDMHKKMIRDGVACDLLTYTTLIDGYLKDGKLQFASDLYSEMLSKGIVPDDITYTALIHGLCNKGQLENAQKILEEMDLKGTTPNVLIYNILIAGQFKAGNLEEAFRLHDEMLDRGLEPDNTTYDILVCGQKV 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13107601 13111071 + Conep04aG0186700.1 Cone4ag1808 436786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 810 844 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Cone4ag1808 858 Gene3D Tetratricopeptide repeat domain 383 454 IPR011990 GO:0005515(InterPro)
Cone4ag1808 858 Gene3D Tetratricopeptide repeat domain 586 665 IPR011990 GO:0005515(InterPro)
Cone4ag1808 858 Gene3D Tetratricopeptide repeat domain 72 242 IPR011990 GO:0005515(InterPro)
Cone4ag1808 858 Gene3D Tetratricopeptide repeat domain 243 313 IPR011990 GO:0005515(InterPro)
Cone4ag1808 858 Gene3D Tetratricopeptide repeat domain 314 382 IPR011990 GO:0005515(InterPro)
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Cone4ag1808 858 Gene3D Tetratricopeptide repeat domain 757 856 IPR011990 GO:0005515(InterPro)
Cone4ag1808 858 Gene3D Tetratricopeptide repeat domain 673 756 IPR011990 GO:0005515(InterPro)
Cone4ag1808 858 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 89 330 - -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 707 740 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 637 671 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 497 531 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 461 496 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 777 811 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 743 775 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 323 355 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 532 565 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 428 457 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 567 599 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 392 425 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 185 215 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 813 845 IPR002885 -
Cone4ag1808 858 NCBIfam pentatricopeptide repeat 603 635 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat 707 737 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat 428 457 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat 603 632 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat 185 211 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat 461 488 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat 568 597 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat family 634 683 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat family 355 403 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat family 494 543 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat family 809 855 IPR002885 -
Cone4ag1808 858 Pfam PPR repeat family 742 788 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 455 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Cone4ag1808 858 Pfam Pentatricopeptide repeat domain 274 333 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 740 774 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 494 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 739 IPR002885 -
Cone4ag1808 858 Gene3D Tetratricopeptide repeat domain 460 585 IPR011990 GO:0005515(InterPro)
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Cone4ag1808 858 SUPERFAMILY HCP-like 401 632 - -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Cone4ag1808 858 SUPERFAMILY TPR-like 182 486 IPR011990 GO:0005515(InterPro)
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 775 809 IPR002885 -
Cone4ag1808 858 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1808 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1717 Cone-Chr7:11407457 Cone4ag1808 Cone-Chr4:13107601 1.82E-32 transposed
Cone4ag1808 Cone-Chr4:13107601 Cone7ag1716 Cone-Chr7:11407028 1.39E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g442 . . Bda01g00732 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1808 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005083 1 7 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 5 1 1 41