Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1826 ATGAATAAAGAAAATTCGGATGCCAAAGCCGACAAGCCTACTGGGAGAATCACACGAGCACGGGCTAGAGCCTTGAGCACAGTAGGAGGGAAAGTTCACCCCTCGAAATGTTCTATTGTAGGTCAGAAGTGTGAACTCCGAGGAAACTCTAAAAGAGCAGCATCGGATGTGAGTAAACTTGCTGGGATTTCCACTGCTTGTCTTCAGCATAAGAAAAGGGCAGTACTTAAAGATGTAACGAACATCTGCTCCGAAGATTCTTACATGAAGTGTATCGGTGCTTCTAAGGTTCAGACTACCAAGCAGGTCCTAAGAGGTCCTGCAAACATGGTGCCAAATATCTCTGTAAAAAGTTCACGAGTGCATGATGATGCAAAGGAAAAATTAGCTGAAGATTTGTCCAAAATAAAGGTGGTGGAATCACAAGAGTTTAAAATAGAAGCGAAGAGTGAAACGGGAAGTTTGTGTGAAAGCATCGGGCGATCTGGTGTAGCAGTTTTTATGCATCCTATGCCTGCAAAACCACAATTCCCTAAGCATAGAGATGAAGATATGGTTTGCGAGAAATTAGGAATCTCTGAAGACCCAGGAATCGTTAACATTGACAAAAACTCAGAAGATACCCAAGCATGTTGCTTATATGCCCCTGAGATATACAATAGAATTCGTCTCACAGAGCTTGATCATAGGGCATCAACGAATTATATGGAAAAGCTGCAAATAGATATCACAGCAAGCATGCGGGGAATTCTAGTTGACTGGCTTGTGGAGGTCTCTGAAGAGTATAAGCTGGTTCCTGATACACTTTACCTCACGGTGAATCTCACCGATCGATTTCTTTCTAAGAATCATATTGGAAAGCAAAGACTTCAGCTTCTTGGTGTAACATGCATGCTAATTGCCTCAAAGTATGAAGAAATCTGTGCCCCACGGGTGGAGGAATTTTGCTTTATTACAGACAGTACTTACACAAAAACAGAGGTATTAGAAATGGAGAGTAGAATCTTAAACTTACTGCATTGTCAGCTCTCTGTTCCCACAACAAAAACATTTCTCAGGAGGTACGTTCAAGCAGCACAGGTTACTTATAAGGTTCCTTGCGAAGAACTCGAGTTTTTGGCAAACTACTTAGCAGAGTTGACTCTTGTTGAGTACAGCTTCCTAGAGTTCCTTCCCTCTCTTATAGCTGCTTCTGCAGTGTTCCTTGCCAGATGGACTCTTAACCAATCAAATCACCCATGGAATCCTACTCTACAGCACTATACCAGTTATAAAGCTTCTGAGCTGAAAACTACAGTCCTTGCCCTGGAAGATTTGCAACTCAACACTAACTGCTCCTCCCTCATCGCTGTACGCCAGAAGTATCGACAAGAAAAGGTTATATCTACTTCACTTTCATCTACCTTATCAGCTTGA 1416 42.23 MNKENSDAKADKPTGRITRARARALSTVGGKVHPSKCSIVGQKCELRGNSKRAASDVSKLAGISTACLQHKKRAVLKDVTNICSEDSYMKCIGASKVQTTKQVLRGPANMVPNISVKSSRVHDDAKEKLAEDLSKIKVVESQEFKIEAKSETGSLCESIGRSGVAVFMHPMPAKPQFPKHRDEDMVCEKLGISEDPGIVNIDKNSEDTQACCLYAPEIYNRIRLTELDHRASTNYMEKLQIDITASMRGILVDWLVEVSEEYKLVPDTLYLTVNLTDRFLSKNHIGKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDSTYTKTEVLEMESRILNLLHCQLSVPTTKTFLRRYVQAAQVTYKVPCEELEFLANYLAELTLVEYSFLEFLPSLIAASAVFLARWTLNQSNHPWNPTLQHYTSYKASELKTTVLALEDLQLNTNCSSLIAVRQKYRQEKVISTSLSSTLSA 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13192809 13196297 + Conep04aG0188500.1 Cone4ag1826 436804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1826 471 PANTHER CYCLINS 195 456 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone4ag1826 471 SUPERFAMILY Cyclin-like 206 343 IPR036915 -
Cone4ag1826 471 SMART cyclin_7 253 337 IPR013763 -
Cone4ag1826 471 SMART cyclin_7 350 438 IPR013763 -
Cone4ag1826 471 PIRSF Cyclin_A_B_D_E 19 471 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone4ag1826 471 SMART Cyclin_C_2 346 469 IPR004367 -
Cone4ag1826 471 SUPERFAMILY Cyclin-like 345 466 IPR036915 -
Cone4ag1826 471 Pfam Cyclin, C-terminal domain 346 466 IPR004367 -
Cone4ag1826 471 Gene3D - 231 344 - -
Cone4ag1826 471 FunFam Mitotic cyclin 6 231 331 - -
Cone4ag1826 471 Gene3D - 217 463 - -
Cone4ag1826 471 FunFam Cyclin A1 333 465 - -
Cone4ag1826 471 Pfam Cyclin, N-terminal domain 217 343 IPR006671 -
Cone4ag1826 471 CDD CYCLIN_AtCycA-like_rpt2 346 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1826 Cone-Chr4:13192809 Cone7ag1514 Cone-Chr7:10540540 3.42E-95 dispersed
Cone17ag0200 Cone-Chr17:961179 Cone4ag1826 Cone-Chr4:13192809 6.56E-137 wgd
Cone20ag1212 Cone-Chr20:8063401 Cone4ag1826 Cone-Chr4:13192809 2.63E-132 wgd
Cone4ag1826 Cone-Chr4:13192809 Cone7ag1730 Cone-Chr7:11463130 3.27E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1826 K06627 - cit:102630346 535.413