Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1828 ATGGGTGTTCCTTCACTGGAACTAGGCCGTGAAAGTGAAACCGACACTTATCCATTTTTAATGGAACCTCCGGAAAGTCTCAACAGTACCCAGCATGTTCTTGACATACCAAGTAGGGAAGAAGCTTCCTCATCCAACTTGTATCATGGAAGACTATCAAATGGGTCAAATACAGCTCAGCTTGAAGACAGACCCTCAGTCAGCACAAGAACGCCTGCATATCAACCTTCATTTTCTTCTTCTAATGGATCAAACAATAGGAACTCTGCTGTAACGAGGAGAGGAGAAGCCCGTAGGCGTAGAAGTCCATCAAATTCTGGGTTGTGGATATCCGTTGAACTATTTCTCACTCTGAGCCAAATTATCGCAGCTATTATAGTGTTGTCATTGTCTGCAAATGAGCATCCACACGAGCCATTGTTTGTGTGGATTGTGGGTTATATGTCTGGATGTGTTGCTACACTTCCTCTTCTTTATTGGCGCTATAGATACCGTAACCAGTCTTCAGAGCAAGGGTCAGCTCAATCCCGTCAGAGTCCTCAGATAAATGTTTCAGGTGGTCTTTCTCTGTCTGTTTCTAGAAGTTCAGAGGGGGAAGATCGTCAGACTGCTGGCCCATCACCTAGAAGTAGTCAAGGTTCAAGACCACTAAGTGCAAGAGTGAAGGCATTTGTGGAATATTTCAAAATGGCCCTGGATTGTTTCTTTGCTGTTTGGTTTGTGGTTGGAAATGTGTGGATCTTTGGCAGGCACGAATCTGCTTCCCACTCTCCAAATTTGTACAGGCTATGCATAGCGTTTCTTGCCATTAGCTGCATTGGGTATGCTATGCCTTTCCTTCTATGTGCAACAATCTGCTGCTGTCTACCTTGTATGATTTCCATCCTCGGATTTCGAGAGGATCTGACCCAGACAAGAGGAGCTACTGCAGAATCAATTGAGGCTTTGCCAATCTACAAGTTCAAGCTGAAGAAAAGTAGAACAGGGGATGATGTAGAAATCGACACTGGTGCTGGGGAAGGTGGACACATTGCTGCTGGAACTGATGGGGGACGAATGATTTCTGGGGAAGACGCTGTTTGTTGCATCTGCTTGGCAAAGTATGGAAACAACGAGGAGTTGAGAGAGTTGCCGTGTTCTCATTTATTCCACAAAGATTGTGTAGATAAGTGGTTAAAACTTAATGCATCTTGTCCTCTTTGCAAGGTCGAGGTCGGTGAGAGCGACTTGGGAGGATCAAACGGAACAAACACCGGCATGGAACGGTGA 1269 45.23 MGVPSLELGRESETDTYPFLMEPPESLNSTQHVLDIPSREEASSSNLYHGRLSNGSNTAQLEDRPSVSTRTPAYQPSFSSSNGSNNRNSAVTRRGEARRRRSPSNSGLWISVELFLTLSQIIAAIIVLSLSANEHPHEPLFVWIVGYMSGCVATLPLLYWRYRYRNQSSEQGSAQSRQSPQINVSGGLSLSVSRSSEGEDRQTAGPSPRSSQGSRPLSARVKAFVEYFKMALDCFFAVWFVVGNVWIFGRHESASHSPNLYRLCIAFLAISCIGYAMPFLLCATICCCLPCMISILGFREDLTQTRGATAESIEALPIYKFKLKKSRTGDDVEIDTGAGEGGHIAAGTDGGRMISGEDAVCCICLAKYGNNEELRELPCSHLFHKDCVDKWLKLNASCPLCKVEVGESDLGGSNGTNTGMER 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13199765 13202713 + Conep04aG0188700.1 Cone4ag1828 436806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1828 422 FunFam E3 ubiquitin-protein ligase 344 410 - -
Cone4ag1828 422 MobiDBLite consensus disorder prediction 44 103 - -
Cone4ag1828 422 MobiDBLite consensus disorder prediction 44 91 - -
Cone4ag1828 422 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 406 - -
Cone4ag1828 422 SUPERFAMILY RING/U-box 356 407 - -
Cone4ag1828 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 409 IPR013083 -
Cone4ag1828 422 ProSiteProfiles Zinc finger RING-type profile. 361 402 IPR001841 -
Cone4ag1828 422 CDD RING-H2_PA-TM-RING 360 402 - -
Cone4ag1828 422 MobiDBLite consensus disorder prediction 1 32 - -
Cone4ag1828 422 SMART ringv_2 360 402 IPR011016 GO:0008270(InterPro)
Cone4ag1828 422 MobiDBLite consensus disorder prediction 170 215 - -
Cone4ag1828 422 Pfam Ring finger domain 361 402 IPR001841 -
Cone4ag1828 422 SMART ring_2 361 401 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1233 Cone-Chr14:10004483 Cone4ag1828 Cone-Chr4:13199765 3.30E-61 dispersed
Cone4ag1828 Cone-Chr4:13199765 Cone6ag0756 Cone-Chr6:3844159 1.21E-39 dispersed
Cone16ag0681 Cone-Chr16:8140932 Cone4ag1828 Cone-Chr4:13199765 3.36E-120 wgd
Cone17ag1053 Cone-Chr17:7925638 Cone4ag1828 Cone-Chr4:13199765 4.44E-186 wgd
Cone2ag0338 Cone-Chr2:1787368 Cone4ag1828 Cone-Chr4:13199765 2.74E-116 wgd
Cone4ag1828 Cone-Chr4:13199765 Cone7ag1732 Cone-Chr7:11469243 4.76E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1828 - - - 0.0