Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1835 ATGAAGAAAGGGATCCAAACTCTGTTTCCCTCCATTCTTATACTCGTTTGCTTGATCCACATTACTGCTCAACAGCAATTCCAGCCTTTCGATCCACAAAGACAAAGACACATCTTGTATTACACAGACCATGATCAGTTAGAGTCTCTGATTGTTCCACCTTCTTTAGTGTTTGAAAACCCAAGAATCCGAAACGCCTACATTGCCCTCCAAACATGGAAGCAGTTAGCCATGGTCTCTGACCCGTTCGAATTTACCGCTAACTGGGTGGGATCCAATGTTTGCAATTATACAGGTGTATTCTGCTCTAAGGCTTTGGACGACCGATCAATCCAAACTGTTGCGGGCATTGATCTAAACCATGGAGATATTGCTGGTCAGCTCCCTGAAGAGCTAGGACTCTTATCAGACATCGCATTGTTTCACATCAACTCTAATCGGTTTTGCGGGAAAATTCCAAACAGTTTCCGAAAATTGAAGATTCTCTTCGAACTTGATGTCAGTAACAATCGGTTTGCAGGACGGTTTCCTGACATTGTTATTGATTTGCCTTGTCTTAAATATCTCGATCTTAGGTTCAATGAGTTTGAAGGTAACGTCCCTAAGGCTCTTTTCGATAAAGATCTTGATGCCATTTTTATTAACGATAACAGATTTGAATTAGAGCTTCCGGACAATTTCGGCAACTCGCCGGTTTCTGTCATTGTTCTTGCCAATAATAAATTCCATGGATGTGTACCTGCAAGTTTAGGAAACATGTCAAAGACATTGAATGAGTTAATCCTTGTAAATAATGGATTGGCTTCTTGCTTGCCAAAGGAAATAGGAATGTTGAGGAATTTGAAAGTGCTTGATTTGAGCTTCAATGATCTTGTGGGTGAATTGCCAGACACGGTTGCTAAAATGGTGAGCTTGGAACGGCTAAATGTCGCCCATAACATGCTTTCGGGGAGTATTCCTAAAAGCATTTGTGAACTTCCTAAGCTGCAGGGGTTTCATTTAGAGTACAATTTTTTCGAAGCCAGGCATTTGGTCTGTTTGGAACTGGAGGAGTTTGATGACAAGAGGAATTGTTTAGACAAGAGGCCGAAACAGAGATCGAAATTGCAATGTGATGTGTTTTTGTCGACCCCGGTTGGATGTAGTGCCTTCAAATGTAAAAACTTTGGCCCCTCTCTTCCTCCTCCACCTCCACCAATGCTTTCACCTCCGCCGCCGCCACCTCTAGTATCTTGCATCAACCTACCACCACCGCCACCTCCAGCTCTGCTTTATGATAGTCCACTGCCCCCGGTTGTTGGAGAACCCTATGGATCGCCACCACCACCACAAATCCCTTATTGA 1344 43.3 MKKGIQTLFPSILILVCLIHITAQQQFQPFDPQRQRHILYYTDHDQLESLIVPPSLVFENPRIRNAYIALQTWKQLAMVSDPFEFTANWVGSNVCNYTGVFCSKALDDRSIQTVAGIDLNHGDIAGQLPEELGLLSDIALFHINSNRFCGKIPNSFRKLKILFELDVSNNRFAGRFPDIVIDLPCLKYLDLRFNEFEGNVPKALFDKDLDAIFINDNRFELELPDNFGNSPVSVIVLANNKFHGCVPASLGNMSKTLNELILVNNGLASCLPKEIGMLRNLKVLDLSFNDLVGELPDTVAKMVSLERLNVAHNMLSGSIPKSICELPKLQGFHLEYNFFEARHLVCLELEEFDDKRNCLDKRPKQRSKLQCDVFLSTPVGCSAFKCKNFGPSLPPPPPPMLSPPPPPPLVSCINLPPPPPPALLYDSPLPPVVGEPYGSPPPPQIPY 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13239822 13241165 - Conep04aG0189400.1 Cone4ag1835 436813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1835 447 FunFam Leucine-rich repeat receptor protein kinase EMS1 227 322 - -
Cone4ag1835 447 SUPERFAMILY L domain-like 66 341 - -
Cone4ag1835 447 Gene3D Ribonuclease Inhibitor 233 371 IPR032675 -
Cone4ag1835 447 FunFam Leucine-rich repeat extensin-like protein 1 67 226 - -
Cone4ag1835 447 Pfam Leucine Rich Repeat 186 204 IPR001611 GO:0005515(InterPro)
Cone4ag1835 447 Gene3D Ribonuclease Inhibitor 66 232 IPR032675 -
Cone4ag1835 447 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 443 IPR051582 -
Cone4ag1835 447 Pfam Leucine rich repeat 279 337 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1471 Cone-Chr12:10518578 Cone4ag1835 Cone-Chr4:13239822 1.67E-56 dispersed
Cone4ag0264 Cone-Chr4:1182885 Cone4ag1835 Cone-Chr4:13239822 3.15E-58 dispersed
Cone4ag1835 Cone-Chr4:13239822 Cone7ag0673 Cone-Chr7:3656919 7.84E-62 dispersed
Cone16ag0754 Cone-Chr16:8541821 Cone4ag1835 Cone-Chr4:13239822 4.47E-57 wgd
Cone2ag0284 Cone-Chr2:1476204 Cone4ag1835 Cone-Chr4:13239822 1.10E-55 wgd
Cone4ag0716 Cone-Chr4:3857442 Cone4ag1835 Cone-Chr4:13239822 3.24E-62 wgd
Cone4ag1835 Cone-Chr4:13239822 Cone7ag1740 Cone-Chr7:11517867 1.94E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1835 - - - 0.0