Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1852 ATGGTGTTAATAATAGAAAGGGTTTCCAAGAGACGGAAAGAGCGGAAAGTAGAAGAACGAGAAGCTCAAGCGATTGATTCCATTTTGCTGCTTGCGCACCAGATTGATTCATGCGAAAGAAAGAGGAAGCTCATGCCTCGGAAGGTGAACTATGGTGTTGATTACGATGAAGATTATGATGACTACAGGCATTATGATTATGATGAAGCTTATGATTTCGATGATGAAGATAATAGTGCATCTAAGTCGGAAGAAGAAAGTAAGACACATGGGATTTGGCGATGCTCCATTTGCACTTATGACAATGATGAAAGCTTGTTCACATGTGATATATGTGGGGTTCTTCGCAACCCTTTGATCACAAGAGTTGGTATGAGTGACAAGAAACCAGATCCTTTCAAGTTCGATGCTCCATCCCCAGACGATTTGGTTTCCAACGGAATGCTTGCCTCCAAAAAGGGTTCAAAAGCGGCAATCCTCACAGACATAAAGTCTTCAAATATTTCATCGGGAGTTACTGAAAAGAATGGTGCAATTAATGACCCATCAACTGCTGAATGGTCAAAGAGGTCTTCTGCCTTGATGCCAAAAGGTAGACAAGATATCTCAAAGAATGACAGTTTCTTTAAGAAAGAGGCTCTTGGTAAACAGTTGAGTTCAAAAGGTTCAGATAGCTCATCTGCCTCAATGCTAAAAGGAAAACATGTAAATGTGGATCAAACTGATTCCTCGAAGAATGTTGCATCCAATATTAAATCAAAAGATAAAGGGGCGGATGACTGGCCTGCATTGATGCCAAAACACAGAGATGAGGTTGTGGATGAGAGCAACACGTCTTCAGGCCAGCGGAACAAGCCACAAAATCTTACCAGTAGTTTGAACAGCATGGCTTTGGATGTTAAATCTGCATATTCAAATTATGTTATTTCTGAAGGAGGAAATTCAGAAACACAGTATAAACCTGAGAAATGGATGCTACCTGATCAAGCTGGAGATTATTTAACACAACTGAATCTTGCAATAGTCGGTCATGTTGATTCAGGAAAATCAACTCTTTCAGGCAGACTTCTTCACCTCTTGGGCCAAGTATCGAAAAAAGAAATGCACAAAAATGAAAAAGAAGCCAAGTTACAGGGAAAAGGGTCTTTTGCTTATGCATGGGCATTGGATGAGAGTGCTGAAGAAAGAGAGAGAGGAATAACTATGACAGTGGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTCGTCATACTTGACTCTCCGGGCCATAAAGATTTTATTCCAAACATGATATCTGGAGCAACACAAGCTGATGCTGCAGTTATTGTAATTGATGCCTCTGTTGGTTCATTTGAAGCTGGAATGGACAGTTCAAAGGGGCAAACAAGGGAGCATGCACAGCTGATAAGGAGTTTTGGTGTTGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTAGATTTCTCCAAGGATCGATATGACTTCATTAAGCAACAACTTGGAACCTTTCTTCGTACTTGTGGGTTCAAAGATTCATCAGTGTGTTGGATTCCATTGAGTGCCATGGGGAATCAAAATCTGACAATGGCCCCTTCTGATGATCGTCTATTGTCCTGGTATCATGGACCTAACCTGTTGGAGGGAATTGATTCTCTTCAACCTCCCACCAGGGACTTCTCGAAGCCTTTGCTTATGCCAATATGTGATGTTATTAAATCACTTTCAATGGGCCAAGTATCTGCCTCCGGTAAACTTGAAGCTGGAGCTCTTCGGATTGGATCTAAGGTTATAGTTATGCCATCTGGCTCTACAGGAACCGTACGTTCTTTAGAACGTGATTCTCGAACCTGCTCCATTGCAAGAGCTGGAGATAACGTGGCTGTTAGCTTGCAAGGCATTGATGGAGGAAATGTAATGGCTGGGGGTGTTCTCTGTCATCCCAATTTTCCAGTTGCTGTTTCAAAACATGTGGAGTTGAAGATTCTTGTCTTGGATTTGGCAACCCCAATTTTAATCGGTTCCCAGTTGGAAGTTCATATACACCATGTAAAGGAGGCTGCTAGAGTAGTAAGGATATTGTCATTACTAGATCCGAAGACTGGGAAAGTGACAAAGAAGGCACCTAGGTGTCTCACTGCAAAGCAAAATGCAGTGATTGAGGTCTGTTTGCTCAGCCCAGTCTGTGTGGAAACGTTCTCAACAAGTAGAGCTCTAGGGCGGGTATTTCTAAGAGCGCTAGGAAGAACAGTAGCCGTGGGGATAGTAACCCGCATAATTGAGGACCAGGAATAG 2298 41.95 MVLIIERVSKRRKERKVEEREAQAIDSILLLAHQIDSCERKRKLMPRKVNYGVDYDEDYDDYRHYDYDEAYDFDDEDNSASKSEEESKTHGIWRCSICTYDNDESLFTCDICGVLRNPLITRVGMSDKKPDPFKFDAPSPDDLVSNGMLASKKGSKAAILTDIKSSNISSGVTEKNGAINDPSTAEWSKRSSALMPKGRQDISKNDSFFKKEALGKQLSSKGSDSSSASMLKGKHVNVDQTDSSKNVASNIKSKDKGADDWPALMPKHRDEVVDESNTSSGQRNKPQNLTSSLNSMALDVKSAYSNYVISEGGNSETQYKPEKWMLPDQAGDYLTQLNLAIVGHVDSGKSTLSGRLLHLLGQVSKKEMHKNEKEAKLQGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVILDSPGHKDFIPNMISGATQADAAVIVIDASVGSFEAGMDSSKGQTREHAQLIRSFGVDQIIVAVNKMDVVDFSKDRYDFIKQQLGTFLRTCGFKDSSVCWIPLSAMGNQNLTMAPSDDRLLSWYHGPNLLEGIDSLQPPTRDFSKPLLMPICDVIKSLSMGQVSASGKLEAGALRIGSKVIVMPSGSTGTVRSLERDSRTCSIARAGDNVAVSLQGIDGGNVMAGGVLCHPNFPVAVSKHVELKILVLDLATPILIGSQLEVHIHHVKEAARVVRILSLLDPKTGKVTKKAPRCLTAKQNAVIEVCLLSPVCVETFSTSRALGRVFLRALGRTVAVGIVTRIIEDQE 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13299639 13304230 + Conep04aG0191100.1 Cone4ag1852 436830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1852 765 MobiDBLite consensus disorder prediction 215 265 - -
Cone4ag1852 765 MobiDBLite consensus disorder prediction 170 190 - -
Cone4ag1852 765 Pfam Elongation factor Tu GTP binding domain 337 553 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1852 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 574 IPR027417 -
Cone4ag1852 765 Gene3D - 330 558 IPR027417 -
Cone4ag1852 765 Gene3D Translation factors 656 765 - -
Cone4ag1852 765 Pfam GTP-eEF1A C-terminal domain-like 659 758 IPR054696 -
Cone4ag1852 765 FunFam elongation factor 1-alpha isoform X4 655 764 - -
Cone4ag1852 765 SMART zf_4 91 115 IPR001876 -
Cone4ag1852 765 PRINTS GTP-binding elongation factor signature 397 405 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1852 765 PRINTS GTP-binding elongation factor signature 478 487 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1852 765 PRINTS GTP-binding elongation factor signature 433 444 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1852 765 PRINTS GTP-binding elongation factor signature 417 427 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1852 765 PRINTS GTP-binding elongation factor signature 338 351 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1852 765 FunFam Elongation factor 1 alpha-like protein 327 558 - -
Cone4ag1852 765 CDD HBS1_C_III 652 760 - -
Cone4ag1852 765 Pfam Elongation factor Tu domain 2 583 647 IPR004161 GO:0005525(InterPro)
Cone4ag1852 765 PANTHER TRANSLATION FACTOR 335 758 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Cone4ag1852 765 CDD EF1_alpha 338 557 - -
Cone4ag1852 765 SUPERFAMILY Translation proteins 556 651 IPR009000 -
Cone4ag1852 765 MobiDBLite consensus disorder prediction 218 251 - -
Cone4ag1852 765 ProSitePatterns Zinc finger RanBP2-type signature. 93 112 IPR001876 -
Cone4ag1852 765 FunFam Translation elongation factor EF-1 561 651 - -
Cone4ag1852 765 MobiDBLite consensus disorder prediction 170 202 - -
Cone4ag1852 765 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 659 761 IPR009001 -
Cone4ag1852 765 Gene3D Translation factors 562 651 - -
Cone4ag1852 765 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 334 565 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag1852 765 MobiDBLite consensus disorder prediction 270 289 - -
Cone4ag1852 765 Gene3D - 83 121 - -
Cone4ag1852 765 SUPERFAMILY Ran binding protein zinc finger-like 90 116 IPR036443 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1852 Cone-Chr4:13299639 Cone8ag0195 Cone-Chr8:1014953 2.29E-83 dispersed
Cone4ag1852 Cone-Chr4:13299639 Cone7ag1756 Cone-Chr7:11599024 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1852 K14416 - vvi:100262342 895.575