Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1854 ATGCCAGGACTAACGTGCAACTCCTGCAACAAAGAATTTAATGACGATTCGGAGCAAAAGCTCCATTACAAGTCGGAATGGCACCGCTACAATCTGAAGCGCAAGGTTGCTGGGGTTCCTGGTGTTACAGAAGCATTGTTTGTAGCTAGACAAACTGCACTTGCTCAGGAGAGCAATAAGTCGAATGAAACCCCAATGTTGTACTCTTGTGGTCTTTGTGGAAAAGGGTATAGAAGTTCCAAAGCCCATGCTCAGCATCTTCAATCTAGAAGTCACATCATGCGAGCTTCTAATGGAACAAACACTGAAGAAGAGGAGAAGGCCATAATTAAACCCATCTCACTTCGAGTCTCGAATAAGCCTCCTCCCCAACAAAGAGGTGGTGGGAATGATGAAGAGAGTGAAGATGAGTGGGAGGAAGTTGATTCAGAGGCACAATTGGTTGGCGAAGCTTCTTCGTCCTTGAATGGATTGAATATGAAGGAGATTTCTGAGGACATGGATGAGGATGACGATGAGGATGATGATGAGGACATGGTGGTTGACATAGATCCATCTTTCTGCTTTATGTGTGATCTCGAGCATGATACCATTGAAAGTTGCATGGTCCATATGCACAAGTATCATGGATTCTTTATACCTGATGTTGATTTTCTCAAGGATCCGAAAGGTCTCCTTACCTATCTTGGCCTGAAGGTGAAGAGAGATTTCATATGCCTATACTGCAATGAAAGATGTCATCCTTTTAACAGCTTGGAAGCTGTTAGGAAGCATATGGCAGCAAAAAGCCACTGCAAGGTGCATTACGGTGATGGCGGAGATGAGGAGGAAGTTGAGTTGGAAGAATTTTATGATTACAGTAGCAGTTACATGGATGAGAATGGGACACAGCTAGTTGCATCAGGTGACATGGCCAATACTGTAGAGCTTGGAACTGCTGGGTCCGAGCTCATCATAACTAGGAAGGCCGATAGTGGAGTCTCAACCAAAACACTTGGATCAAGAGAATTTTTACGATATTATCGTCAGAAACCCCGTCCGTCTGCAATGAACGATATGGCCATAATTGCTGCATTGGCTTCAAGGTACAAGAGCATGGGTTTAACAACTGTGCAATCAAGGCAAAGGATGGTGAGGATGAAGGTGATGAAAGAAATGAATAGATCAGGATTGGAGGCCATGCGGACCAAGATCGGATTGAAGAATAATAAAATCCGTAACCTACCCAATAACGTCCCATATTAA 1245 43.86 MPGLTCNSCNKEFNDDSEQKLHYKSEWHRYNLKRKVAGVPGVTEALFVARQTALAQESNKSNETPMLYSCGLCGKGYRSSKAHAQHLQSRSHIMRASNGTNTEEEEKAIIKPISLRVSNKPPPQQRGGGNDEESEDEWEEVDSEAQLVGEASSSLNGLNMKEISEDMDEDDDEDDDEDMVVDIDPSFCFMCDLEHDTIESCMVHMHKYHGFFIPDVDFLKDPKGLLTYLGLKVKRDFICLYCNERCHPFNSLEAVRKHMAAKSHCKVHYGDGGDEEEVELEEFYDYSSSYMDENGTQLVASGDMANTVELGTAGSELIITRKADSGVSTKTLGSREFLRYYRQKPRPSAMNDMAIIAALASRYKSMGLTTVQSRQRMVRMKVMKEMNRSGLEAMRTKIGLKNNKIRNLPNNVPY 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13307675 13310000 - Conep04aG0191300.1 Cone4ag1854 436832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1854 414 MobiDBLite consensus disorder prediction 95 159 - -
Cone4ag1854 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
Cone4ag1854 414 Gene3D Classic Zinc Finger 4 92 - -
Cone4ag1854 414 PANTHER ZINC FINGER PROTEIN 622 1 412 IPR040025 GO:0030687(PANTHER)|GO:0042273(PANTHER)
Cone4ag1854 414 Pfam C2H2 type zinc-finger (2 copies) 188 290 IPR041661 -
Cone4ag1854 414 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cone4ag1854 414 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Cone4ag1854 414 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone4ag1854 414 SMART c2h2final6 237 264 IPR013087 -
Cone4ag1854 414 SMART c2h2final6 4 28 IPR013087 -
Cone4ag1854 414 SMART c2h2final6 68 92 IPR013087 -
Cone4ag1854 414 SMART c2h2final6 186 209 IPR013087 -
Cone4ag1854 414 SUPERFAMILY beta-beta-alpha zinc fingers 171 289 IPR036236 -
Cone4ag1854 414 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1854 Cone-Chr4:13307675 Cone7ag1758 Cone-Chr7:11612266 6.79E-260 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46058 PF02537 CRCB 4.70E-16 CL0184 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1854 K14816 - cit:102630868 602.823