Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1858 ATGGATGATTACTCGGGTGAGAGAGTTATTCATGGGCTTGTTGTTTCAGGAAATGGAACCGGTTTAGTTCTGAGGGATAATGTGAGCAATAGAGATCGAAATACTCAAAAGTGTAGCTGTAGCCGTCTTAACTGCAGTGCCCGAATTAACTCCATGAAGAGTTCTCAAATTGGCTCTTCTGGGAAAGCAAAGTCAATAAGCCCATCGGCCCACACTTCCTCTAGTAAGAAAGAACCAGTCAGAATATCCTCTAGAACTTGTTCTTCTTCAATCACCAATCCCAAGAAACCATCAAACAAGCTTATGAGGATGTTGGGATCATCTTCTCAAAATGGATCAGAAGTTTCAGAATCCCTCACCCCACCAGGAAAGATACGAAGGGGCCCCACATCAATGGAAGTGGGAAGCTCCAGTATTTCATCAAGTGCAAGACATCAGATGTATAGTCAGAGACCTAGAATTCATAATCAGGATAAAAATACTAGTGGTGGTTCATTGTTTTCTTCGAGATCTAAAAGTTCAGCTCAATCAACGCCTATCAGTACTAACAAGCACAGTTTAAGAAATCTCAAATGCAATTCAATATCGGATATTGTTTCGTCTGGATGTTCTTCATCAGATCCTAATTCCAATAGAATGAAATACATGGTAGATAAAAGAACTTCTGATGATGGAGAAAGTACTAAAGGAAATAAAATGAGTGGGCCATCCTCGAAAAATGCACGTCCCGTTTGTCGCATCTCTGTTTGGGATAAAGAACGAGCCAATGAAGAGGGTCCTTCTCGCCAGGAAAGTTCTGTTCAACCGAATGGGACTAAGAGATCTACAAGTGGGAACACAAGTTCTGTTCCATCTCCTATTGGAGGAACGGGAAAGAAACTGTCATTGGATGAATCACATGATATGATCTCAAATTTTCCTCAACCATACCTTTCCATTGATAGAAATGCTTCAAGACTCTCAACATATAGTAGATCTGGTAATAACAGTGAGAGTTCTAGTGTTTTACGACCATCCTCTTCTTCTGAAACTGGATGGACCAGTTCTTCATTGAGTAGTGACGGCTCCAGAAACAGTAACATGGATGGATTTATGGAGGTGCTATTGGCACTGGAAAGACTTGATCGTAATCAAGAGTTAACTTATGAGCAAGCAATGTCTTTGGAAACCAATATGTTTCTTAGTGGCTTAAACTTCTATGATAGGCATAGAGACATGAGGTTGGACATTGATAACATGTCATATGAGGAATTATTGGCTCTAGAAGAGAGAATGGGAACTGTAAGCACAGCAGTGCCAGAGGAAGCTTTATTGGAATGTCTTGAGAGAAGCTTCTTTCCCTACTCTCTTCCAGCAGAAGAAGATGCTGCCATGATTGCCAATGAGGATAATAAATTATATGTTAAATGTTGCATTTGCCAGCAAGAGTATGAGAGTGGAGATGAGATTGGAAGGCTGCAATGTGAGCATAGGTTTCATCACGAGTGCATACGAGAATGGCTTGGAATGAAGAACTGGTGCCCTATCTGCAAAACCTCAGCCACATCCTCGTCAGAATGTCCATCCTAG 1569 41.11 MDDYSGERVIHGLVVSGNGTGLVLRDNVSNRDRNTQKCSCSRLNCSARINSMKSSQIGSSGKAKSISPSAHTSSSKKEPVRISSRTCSSSITNPKKPSNKLMRMLGSSSQNGSEVSESLTPPGKIRRGPTSMEVGSSSISSSARHQMYSQRPRIHNQDKNTSGGSLFSSRSKSSAQSTPISTNKHSLRNLKCNSISDIVSSGCSSSDPNSNRMKYMVDKRTSDDGESTKGNKMSGPSSKNARPVCRISVWDKERANEEGPSRQESSVQPNGTKRSTSGNTSSVPSPIGGTGKKLSLDESHDMISNFPQPYLSIDRNASRLSTYSRSGNNSESSSVLRPSSSSETGWTSSSLSSDGSRNSNMDGFMEVLLALERLDRNQELTYEQAMSLETNMFLSGLNFYDRHRDMRLDIDNMSYEELLALEERMGTVSTAVPEEALLECLERSFFPYSLPAEEDAAMIANEDNKLYVKCCICQQEYESGDEIGRLQCEHRFHHECIREWLGMKNWCPICKTSATSSSECPS 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13328339 13331537 + Conep04aG0191700.1 Cone4ag1858 436836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1858 522 SUPERFAMILY RING/U-box 469 515 - -
Cone4ag1858 522 MobiDBLite consensus disorder prediction 261 288 - -
Cone4ag1858 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 518 IPR013083 -
Cone4ag1858 522 SMART ring_2 470 510 IPR001841 -
Cone4ag1858 522 MobiDBLite consensus disorder prediction 53 118 - -
Cone4ag1858 522 MobiDBLite consensus disorder prediction 131 185 - -
Cone4ag1858 522 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 69 514 IPR045191 GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone4ag1858 522 MobiDBLite consensus disorder prediction 219 295 - -
Cone4ag1858 522 MobiDBLite consensus disorder prediction 53 185 - -
Cone4ag1858 522 MobiDBLite consensus disorder prediction 321 358 - -
Cone4ag1858 522 MobiDBLite consensus disorder prediction 246 260 - -
Cone4ag1858 522 ProSiteProfiles Zinc finger RING-type profile. 470 511 IPR001841 -
Cone4ag1858 522 Pfam Ring finger domain 469 511 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1858 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1588 Cone-Chr4:12129337 Cone4ag1858 Cone-Chr4:13328339 3.58E-32 dispersed
Cone4ag1858 Cone-Chr4:13328339 Cone6ag0178 Cone-Chr6:850605 1.18E-24 dispersed
Cone7ag1361 Cone-Chr7:9875390 Cone4ag1858 Cone-Chr4:13328339 6.95E-06 dispersed
Cone17ag1078 Cone-Chr17:8059314 Cone4ag1858 Cone-Chr4:13328339 7.98E-97 wgd
Cone20ag0634 Cone-Chr20:3811066 Cone4ag1858 Cone-Chr4:13328339 1.94E-88 wgd
Cone4ag1858 Cone-Chr4:13328339 Cone6ag1591 Cone-Chr6:12367810 4.40E-08 wgd
Cone4ag1858 Cone-Chr4:13328339 Cone7ag1763 Cone-Chr7:11634254 1.67E-284 wgd
Cone4ag1858 Cone-Chr4:13328339 Cone9ag1512 Cone-Chr9:11065876 1.62E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1858 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029825 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2