Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1861 ATGGCCGTGGATCTAAAGATGGACGATCATACGGCTATACAAGAAGCTGCATCACAAGGCATGAAGAGCATGGAACATCTGATCCGCATGCTATCTACCAACCAGCAATCTAATCAGCTAGCTTGCTCAGATCTCGCCAATCGGACTGTTAACAAATTTCAGAAAGTCATTTCTCTAGTCAAAAGGACCGGCCACGCTCGGTTCAGGCGCGGTCCGCCTTACTCCTCTGCCTCCTCGTCTTCATCTACTAACTTATCATCAGTTCTTCCCGTTGATCATTCGTCGACCATAAGCCTTACCCCGACGACGTTTACTCCTCCAGTGATCGTTTCTCCTTCACCGATCATCGCACCGGCAACTGTCCATCAACCGACTGCAACCGCCTCTCTGACTGGATTTGTCCAGTCACAGGCACAGAGCATGACTCTGGATTTCACGAAACCTAACATTTTGAGCTCAAATCTAAAGAGTACGGAGCTTGAATTCTCTAAGGAAACCTTTAGCGTGTCCTCTAGTTCGTCGTTCATGTCGTCAGCTATTACCGGAGACGGAAGTGTATCGAACGGAAAGTTAGGACAGTCACTTTTCTTAACTCCTGCTCCGGCTGTCTCTGGCGGTAAGCCTCCACTATCGTCTCCACCATTCAAGAAGAGATGCCATGAGCATGACCACTCGGTCCACTCCGATACTTTATCAGGAAGATTTTCCGGCTCTTCCTCGGCCTCCGGAAAGTGCCATTGCTCCAAGAGAAGGAAAAATCGCGTGAAGAAAACGGTTAGAGTACCGGCGATCAGTTCGAAAGTGGCGGATATCCCACCGGACGAGTACTCGTGGAGAAAGTACGGACAGAAGCCGATCAAGGGATCTCCATACCCACGGGGATATTACAAGTGTAGTACGATGAGGGGGTGCCCAGCGAGGAAACACGTAGAAAGGGCGACGGATGATCCAACGATGCTGATTGTAACTTACGAAGGCGAGCACCATCACGCCCAGCCCGCGATGCAGGAGAACGTGACCCTGGCTGTGGCTGGTGGAGTGGGTTTGGTTTACGCGTCAACTTGA 1065 50.7 MAVDLKMDDHTAIQEAASQGMKSMEHLIRMLSTNQQSNQLACSDLANRTVNKFQKVISLVKRTGHARFRRGPPYSSASSSSSTNLSSVLPVDHSSTISLTPTTFTPPVIVSPSPIIAPATVHQPTATASLTGFVQSQAQSMTLDFTKPNILSSNLKSTELEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGQSLFLTPAPAVSGGKPPLSSPPFKKRCHEHDHSVHSDTLSGRFSGSSSASGKCHCSKRRKNRVKKTVRVPAISSKVADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERATDDPTMLIVTYEGEHHHAQPAMQENVTLAVAGGVGLVYAST 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13342698 13344413 - Conep04aG0192000.1 Cone4ag1861 436839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1861 354 FunFam WRKY transcription factor 65 256 333 - -
Cone4ag1861 354 SMART WRKY_cls 272 332 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1861 354 ProSiteProfiles WRKY domain profile. 267 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1861 354 Gene3D WRKY domain 259 334 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1861 354 Pfam WRKY DNA -binding domain 274 330 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1861 354 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 336 IPR044810 GO:0003700(InterPro)
Cone4ag1861 354 SUPERFAMILY WRKY DNA-binding domain 270 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1861 354 Pfam Plant zinc cluster domain 216 270 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1268 Cone-Chr18:8911535 Cone4ag1861 Cone-Chr4:13342698 1.28E-88 dispersed
Cone2ag0664 Cone-Chr2:31696250 Cone4ag1861 Cone-Chr4:13342698 1.54E-62 dispersed
Cone4ag1861 Cone-Chr4:13342698 Cone7ag1354 Cone-Chr7:9836188 3.24E-68 dispersed
Cone17ag1083 Cone-Chr17:8073748 Cone4ag1861 Cone-Chr4:13342698 9.99E-135 wgd
Cone20ag0629 Cone-Chr20:3786118 Cone4ag1861 Cone-Chr4:13342698 3.60E-128 wgd
Cone4ag1861 Cone-Chr4:13342698 Cone7ag1766 Cone-Chr7:11645922 2.73E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46059 PF00155 Aminotran_1_2 7.40E-65 CL0061 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1861 - - - 0.0