Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1863 ATGGAATATTCCGGCGATCGGTTCGACGTGATTGTAGTCGGAGGAGGGATCATGGGCAGCTCAACCGCTTACCAAGTGGCTAAGAGAGGACACAAAGCCTTGCTCCTCGAGCAATTCGACTTCTTGCACCACCGTGGCTCGTCTCACGGAGAGTCCCGGACCATTCGAGCCACCTACCCGGAAGAATACTACCAAGCCATGGTCATGGAATCCTCCACCCTTTGGGAAGAGGCTGAGTCCGAGATCGGGTTCAAGGTCTATTTCAAGGCCCAACATCTCGACATGGGCCCGTCCGACGACAAGAACCTCCGTGCCGTCATTGCCAATTGCAAGAAAGTCTCTGTCCCCCATCGGATTCTCGACCGGGCGCAAGTGGCTGAGATGTATTCGGGACGGGTGGAGATCCCAGACAATTGCTTTGCTGTTTGGAGTGAGCTTGGCGGAGTAATCAAGCCCACTAAGGCAGTATCCATGTACCAAACACTAGCATTTCAAAAGGGAGCAATCCTAAGAGATAGTATGGAAGTGGAAGAGATCAAGAGAGACACAGTGAATGGAGGAATAGTGGTTTCAACGAGTAATGGTGAGAGGTTTTGGGGTAAGAAATGTGTGGTGACAGTTGGAGCTTGGATGAGGAAGTTAGTTAAAGCTGTTAGTGGTCTTGAACTGCCTATACAACCACTAGAAACTACCGTCTGTTATTGGAGGATCAAGGAAGGGCACGAGTCGGAATATGCAATCGGAGGGGATTTCCCGACGTTTGCGAGTTATGGGGACCCTTATATTTACGGTACGCCCTCGTTGGAGTTTCCGGGCCTGATCAAGGTGGCAGTTCACGGAGGGTACCCGTGCGACCCAGACAAAAGGCCGTGGGGCCCGGGGGTGTCGTTAGGGCCATTGAAGGAATGGATCAAGGAAAGATTTGGGGGCATGGTGGATTCCGGTGCCCCGGTTGCAACACAGTTGTGTATGTATTCGATGAGTCCAGACGAGGATTTTGTGATTGATTTCTTGGGTAGGGAGTTTGGGAGGGATGTCGTGGTGGGCGGCGGGTTTTCGGGTCATGGGATGAAGATGGCACCAGTTGTGGGAAGGGTATTGGCTGACCTTGCCCTTGTTGGGGAGGCGCAAGGAGTGGAGCTCAAGCACTTTAGGATATCTAGATTTGAGGAGAATCCTATAGGAAACGTCAAGGATTTTGCAGATCAAGTCAGTATTTCTTCAAGTGAAAAGTGA 1236 51.38 MEYSGDRFDVIVVGGGIMGSSTAYQVAKRGHKALLLEQFDFLHHRGSSHGESRTIRATYPEEYYQAMVMESSTLWEEAESEIGFKVYFKAQHLDMGPSDDKNLRAVIANCKKVSVPHRILDRAQVAEMYSGRVEIPDNCFAVWSELGGVIKPTKAVSMYQTLAFQKGAILRDSMEVEEIKRDTVNGGIVVSTSNGERFWGKKCVVTVGAWMRKLVKAVSGLELPIQPLETTVCYWRIKEGHESEYAIGGDFPTFASYGDPYIYGTPSLEFPGLIKVAVHGGYPCDPDKRPWGPGVSLGPLKEWIKERFGGMVDSGAPVATQLCMYSMSPDEDFVIDFLGREFGRDVVVGGGFSGHGMKMAPVVGRVLADLALVGEAQGVELKHFRISRFEENPIGNVKDFADQVSISSSEK 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13359157 13360593 - Conep04aG0192200.1 Cone4ag1863 436841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1863 411 PANTHER PEROXISOMAL SARCOSINE OXIDASE 6 398 IPR045170 GO:0008115(PANTHER)|GO:0016491(InterPro)|GO:0050660(InterPro)
Cone4ag1863 411 Pfam FAD dependent oxidoreductase 9 370 IPR006076 -
Cone4ag1863 411 SUPERFAMILY FAD-linked reductases, C-terminal domain 226 329 - -
Cone4ag1863 411 NCBIfam amino oxidase 8 393 - -
Cone4ag1863 411 SUPERFAMILY FAD/NAD(P)-binding domain 8 390 IPR036188 -
Cone4ag1863 411 Gene3D - 9 375 IPR036188 -
Cone4ag1863 411 Gene3D - 63 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1863 K00306 - - cit:102622287 641.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1769 Cone-Chr7:11660212 Cone4ag1863 Cone-Chr4:13359157 5.15E-79 transposed
Cone4ag1863 Cone-Chr4:13359157 Cone7ag1768 Cone-Chr7:11659527 1.44E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g666 . . . . . Bpe02g00222 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1863 Cone7ag1768 . . . Csa03g04410 Chy04g00290 . . . . . . . . . Sed13g2098 . . Cma09g00532 . . . . . Bhi09g02378 Tan01g3741 Cmetu04g0136 . Hepe01g2094 Mch11g0632 . . . . . . . . . . . Cme04g00332
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 1 1 1 33