Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1864 ATGTCTCGTGTGTATGTGGGAAACTTGGATCCAAGAGTTACTGAGCGAGAACTTGAAGATGAATTTCGTGTATTTGGTGTTATAAGGAGTGTATGGGTTGCAAGAAGACCCCCAGGCTATGCGTTTATTGACTTTGATGACTCTAGGGATGCAAAGGATGCAATCCATGAATTAGATGGGAAGAATGGTTGGAGAGTTGAGCTTTCTCACAACTCTAGGGGTGGTGGCGGTGGGGGTGGTCGTGGAGGAGGCCGTGGCCGTTCTGGTGGTTCTGACTTGAAATGCTATGAGTGTGGTGAGCCTGGACATTTTGCTCGTGAATGCAGGTCTCGTGGTGGTTCTGGAAGAGTTCGTAGCCGTAGTCCTAGATATCGCAGAAGTCCAAGCTATGGCCGCAGGAGTTACAGTCCCCGCGGGCGCTCTCCAGCACGCAGGAGTTTGTCACCTCGTGGACGCAGCTATAGCAGATCGCCACCATACCGTGGCCGTGAGGAGTTGGCTTATGCCAATGGAAATGGTTTAAGGGATCGGCATAGAAGCAGGAGCTGA 549 51.37 MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDSRDAKDAIHELDGKNGWRVELSHNSRGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGSGRVRSRSPRYRRSPSYGRRSYSPRGRSPARRSLSPRGRSYSRSPPYRGREELAYANGNGLRDRHRSRS 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13363054 13365602 + Conep04aG0192300.1 Cone4ag1864 436842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1864 182 MobiDBLite consensus disorder prediction 107 182 - -
Cone4ag1864 182 FunFam Serine/arginine-rich splicing factor RSZ22A 91 150 - -
Cone4ag1864 182 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676(InterPro)
Cone4ag1864 182 Gene3D - 1 92 IPR012677 -
Cone4ag1864 182 CDD RRM_SRSF3_like 3 71 - -
Cone4ag1864 182 SMART rrm1_1 3 69 IPR000504 GO:0003723(InterPro)
Cone4ag1864 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723(InterPro)
Cone4ag1864 182 FunFam serine/arginine-rich splicing factor RSZ22-like 1 93 - -
Cone4ag1864 182 SUPERFAMILY Retrovirus zinc finger-like domains 87 112 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone4ag1864 182 ProSiteProfiles Zinc finger CCHC-type profile. 94 110 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone4ag1864 182 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 159 IPR050907 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0016607(PANTHER)
Cone4ag1864 182 MobiDBLite consensus disorder prediction 66 93 - -
Cone4ag1864 182 Pfam Zinc knuckle 94 109 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone4ag1864 182 Pfam RNA recognition motif 4 61 IPR000504 GO:0003723(InterPro)
Cone4ag1864 182 Gene3D - 93 146 - -
Cone4ag1864 182 SMART c2hcfinal6 94 110 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1864 K12896 - - rcu:8265204 232.646
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1022 Cone-Chr19:7633220 Cone4ag1864 Cone-Chr4:13363054 6.52E-58 dispersed
Cone4ag1864 Cone-Chr4:13363054 Cone5ag0726 Cone-Chr5:3127659 6.59E-11 dispersed
Cone4ag1821 Cone-Chr4:13170351 Cone4ag1864 Cone-Chr4:13363054 8.12E-10 transposed
Cone17ag1084 Cone-Chr17:8081109 Cone4ag1864 Cone-Chr4:13363054 3.98E-57 wgd
Cone4ag1864 Cone-Chr4:13363054 Cone7ag1771 Cone-Chr7:11663010 5.16E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g661 . . . . . Bpe02g00223 . . . . Cma01g01578 . . . . . . . . . . . . . . . . . . . . Cone4ag1864 Cone7ag1771 . . . Csa03g04411 Chy04g00289 . . . . . . . . . . . . Cma09g00533 . . . . . . . . . . . . . . . . . . . . . . Cme04g00330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76