Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1865 ATGGCTCCTAGATTGGATTTCGCCAGCTGGTGGAGTAAAGATAGTAGCCAAAAGGGAGGCGGAACAGTACCCGTTATAGTGAAAATGGAGAAACCCACTTTCTCAGTGGTGGAAATCGCCGGCGCCGACGCCGCATTCCGGCCGGTGGAAAAGAGCCGTGGCAAAAACGCCAAACAAGTTACGTGGGTTCTTCTTCTCAAGGCTCATAGAGCTGTCGGTTGCATAGCCTGGCTCATTTCCCTTCTCTGGTCTTTACTTGGAACCATTAAGAAAAGGTTGATCTACAGGCAAGGAGTTGCCATGGAGAGTGGCAAATTGGGCAGAGGGAAATTGCTTTTTGGGGTCATTAGAGTCTTTTTAATCGCTTCGTTAGCAATTCTGGGATTTGAAGTGGTTGCGTATTTTAAAGGGTGGCATTATCTTCACAACCCCTCCAATTTGCATATCATAAGTATACCTCAAGCTTCTGATTTTCAGGGACTGCTCCATACAATCTATGTTGCTTGGTTAACTTTTCGGGCTGATTACATTGCTTATGTGATTCAATCACTCTCTCGGTTTTGTGTTTCTCTGTTTCTTATTCAGTCCTTGGATCGTATGGTGCTTAGCTTAGGTTGCTTGTGGATAAAGTATAAGAAGATTAAGCCCAGGATAGATGAGGATCTTTTCAAGTTGAATGATATTGAGAAGAAAACAGGGTATGAGCATCCAATGGTTCTTGTTCAAATTCCTATGTGTAATGAGAGAGAGGTGTATGAGCAATCTATATCGGCCTGTTGCCAACTTGATTGGCCAAAGGATAATTTGCTAATTCAAGTTCTAGATGATTCCGATGATGAGAGCATCCAATGGTTAATTAAGTCGGAGGTTAACAAATGGAGCCAAAAGGGTGTTAACATAATCTATAGGCATCGTTTCGTAAGAACTGGTTACAAAGCCGGGAATCTCAAGTCCGCTATGAGCTGTGATTATGTCAAAGATTATGAGTTTGTTGCAATCTTTGATGCTGATTTTCAACCTAACCCAGATTTCCTTAAGCAAACTGTGCCTCATTTCAAGGACAGCCCGGATTTAGGATTGGTACAAGCTAGATGGGCTTTTGTGAATAAGGAGGAGAACTTGTTGACTCGGCTACAAAACATAAACCTGTGTTTCCACTTTGAGGTGGAACAACAGGTCAATGGAGTATTCCTTAATTTCTTCGGTTTTAATGGAACGGCCGGGGTTTGGAGAATCAAAGCTCTAGAGGAGTCGGGTGGGTGGCTCGAAAGGACAACTGTAGAGGATATGGACATAGCTGTTAGGGCCCACCTTAACGGCTGGAAATTCATCTATCTCAATGACGTTCAGGTCCTTTGTGAAGTACCAGAGTCATATGAAGCTTATAGAAAGCAGCAACATCGCTGGCATTCTGGCCCCATGCAACTTTTTCGGTTATGTCTGCCTGCTATTATAACTTCGAAGATATCGACATGGAAGAAAGCAAATTTGATACTACTATTCTTTCTATTAAGGAAACTAATTCTCCCATTCTATTCCTTCACACTGTTCTGCATAATTCTTCCTCTAACAATGTTTGTACCAGAAGCTGAGCTTCCCATTTGGGTAATTTGTTACATACCCGTTTTCATGTCATTTCTCAATATTCTCCCTGCTCCAAAATCCTTCCCTTTTATCGTCCCTTACCTCTTATTTGAAAACACCATGTCCGTAACCAAATTCAATGCTATGGTTTCCGGATTGTTCCAATTGGGTAGCTCTTATGAGTGGATTGTGACCAAAAAATCCGGCCGTTCTTCCGAATCTGATTTACTTGCTGCTGCTGAAAGAGATTCAAAGATAATGAACCAACCTCAGATTTATAGAGGTTCTTCTGAAAGCGAGCTTTCACAATTGAGCTGCTTGAAAGAACAGAAAGAAGTAGTAGCTAAACGTGCTAAGAAAGTTAACAAGATATACAAGAAGGAGCTTGCTCTGGCATTTCTTTTATTGACGGCTTCAGTTAGAAGTCTTCTAGCAGCGCAAGGGGTTCATTTTTACTTCTTGCTTTTCCAAGGGGTGACTTTTCTTCTTGTGGGTCTGGATCTAATTGGGGAGCAAATGAGCTAG 2109 42.06 MAPRLDFASWWSKDSSQKGGGTVPVIVKMEKPTFSVVEIAGADAAFRPVEKSRGKNAKQVTWVLLLKAHRAVGCIAWLISLLWSLLGTIKKRLIYRQGVAMESGKLGRGKLLFGVIRVFLIASLAILGFEVVAYFKGWHYLHNPSNLHIISIPQASDFQGLLHTIYVAWLTFRADYIAYVIQSLSRFCVSLFLIQSLDRMVLSLGCLWIKYKKIKPRIDEDLFKLNDIEKKTGYEHPMVLVQIPMCNEREVYEQSISACCQLDWPKDNLLIQVLDDSDDESIQWLIKSEVNKWSQKGVNIIYRHRFVRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFQPNPDFLKQTVPHFKDSPDLGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVQVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIITSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPIWVICYIPVFMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKSGRSSESDLLAAAERDSKIMNQPQIYRGSSESELSQLSCLKEQKEVVAKRAKKVNKIYKKELALAFLLLTASVRSLLAAQGVHFYFLLFQGVTFLLVGLDLIGEQMS 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13366518 13370245 - Conep04aG0192400.1 Cone4ag1865 436843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1865 702 SUPERFAMILY Nucleotide-diphospho-sugar transferases 239 539 IPR029044 -
Cone4ag1865 702 Pfam Glycosyl transferase family group 2 331 540 IPR001173 -
Cone4ag1865 702 FunFam probable xyloglucan glycosyltransferase 5 230 455 - -
Cone4ag1865 702 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 229 456 IPR029044 -
Cone4ag1865 702 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 162 701 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1865 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0905 Cone-Chr16:9361254 Cone4ag1865 Cone-Chr4:13366518 0 dispersed
Cone17ag0903 Cone-Chr17:7115534 Cone4ag1865 Cone-Chr4:13366518 0.00E+00 dispersed
Cone20ag0246 Cone-Chr20:1089883 Cone4ag1865 Cone-Chr4:13366518 1.64E-287 dispersed
Cone2ag0150 Cone-Chr2:782959 Cone4ag1865 Cone-Chr4:13366518 0 dispersed
Cone4ag1635 Cone-Chr4:12361036 Cone4ag1865 Cone-Chr4:13366518 1.78e-314 dispersed
Cone4ag1865 Cone-Chr4:13366518 Cone7ag1317 Cone-Chr7:9641464 6.36e-310 dispersed
Cone4ag1865 Cone-Chr4:13366518 Cone7ag1772 Cone-Chr7:11666227 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1130 . 230 396 REM Transcription Factor Family AT1G49480 64.1 1.8e-52 203.4
Cone3ag1121 . 257 400 REM Transcription Factor Family AT1G49480 70.8 4.4e-51 198.7
Cone8ag1166 . 150 358 REM Transcription Factor Family AT1G49480 53.3 1.3e-50 197.2
Cone12ag1121 . 197 358 REM Transcription Factor Family AT1G49480 63.0 2.2e-50 196.4
Cone7ag1772 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.5e-312 1068.9
Cone4ag1865 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.7e-311 1065.4
Cone4ag1635 . 1 704 REM Transcription Factor Family AT2G24630 64.7 7.9e-261 897.1
Cone7ag1317 . 1 702 REM Transcription Factor Family AT2G24630 64.1 6.7e-260 894.0
Cone17ag0903 . 1 713 REM Transcription Factor Family AT2G24630 64.5 1.9e-259 892.5
Cone2ag0150 . 6 671 REM Transcription Factor Family AT2G24630 67.2 2.9e-255 878.6
Cone16ag0905 . 6 673 REM Transcription Factor Family AT2G24630 66.4 3.8e-255 878.2
Cone20ag0246 . 1 682 REM Transcription Factor Family AT2G24630 62.0 1.7e-242 836.3
Cone7ag1772 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.5e-312 1068.9
Cone4ag1865 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.7e-311 1065.4
Cone4ag1635 . 1 704 REM Transcription Factor Family AT2G24630 64.7 7.9e-261 897.1
Cone7ag1317 . 1 702 REM Transcription Factor Family AT2G24630 64.1 6.7e-260 894.0
Cone17ag0903 . 1 713 REM Transcription Factor Family AT2G24630 64.5 1.9e-259 892.5
Cone2ag0150 . 6 671 REM Transcription Factor Family AT2G24630 67.2 2.9e-255 878.6
Cone16ag0905 . 6 673 REM Transcription Factor Family AT2G24630 66.4 3.8e-255 878.2
Cone20ag0246 . 1 682 REM Transcription Factor Family AT2G24630 62.0 1.7e-242 836.3
Cone7ag1772 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.5e-312 1068.9
Cone4ag1865 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.7e-311 1065.4
Cone4ag1635 . 1 704 REM Transcription Factor Family AT2G24630 64.7 7.9e-261 897.1
Cone7ag1317 . 1 702 REM Transcription Factor Family AT2G24630 64.1 6.7e-260 894.0
Cone17ag0903 . 1 713 REM Transcription Factor Family AT2G24630 64.5 1.9e-259 892.5
Cone2ag0150 . 6 671 REM Transcription Factor Family AT2G24630 67.2 2.9e-255 878.6
Cone16ag0905 . 6 673 REM Transcription Factor Family AT2G24630 66.4 3.8e-255 878.2
Cone20ag0246 . 1 682 REM Transcription Factor Family AT2G24630 62.0 1.7e-242 836.3
Cone10ag1130 . 230 396 REM Transcription Factor Family AT1G49480 64.1 1.8e-52 203.4
Cone3ag1121 . 257 400 REM Transcription Factor Family AT1G49480 70.8 4.4e-51 198.7
Cone8ag1166 . 150 358 REM Transcription Factor Family AT1G49480 53.3 1.3e-50 197.2
Cone12ag1121 . 197 358 REM Transcription Factor Family AT1G49480 63.0 2.2e-50 196.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38