Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1867 ATGTTTCCTTCGTATTATGAAAGCCAGGATTCATCAAAAGCTTCAGCTAAAGTTTCCAGCAGCTTGGAATTAGACATAGATGAAAGCTTTGAGTCAATGCAGTTCGGGCGGAGGTCAATTGATATCGTTTATCCGTCTGATTTCTCTTCAATTTCTCAGGAAAGTGACAGATCGTCAACCTCACCACAGGCTATTGTAAGCACCCCATGTTTCTTTTCATTTCACAATGCGAAAATCGTGAATCTTTTGATCCGGGTTTTGATTATTGTATTGGAATTGCAGGATGATGTGGAGGCTGAGATGAGGAGGCTAAAGCTGGAGCTTAAACAAACTATGGAAATGTATAGTACAGCTTGCAAGGAAGCTCTTACCGCTAAACAAAAAGCAATGGAGCTTCAAAAATGGAAATTAGAGGAGGAACGAAAACTGGGAGAGGCGAGACAGGCAGAAGAAGCTGCATTAGCAATTGCGGATAAAGAAAAGGCGAAATCCCGAGCAGCCATAGAGGCAGCCGAGGCAGCAAAAAGGATTGCGGAGCTAGAATCGCAGAAGAGAATCACTGCAGAGAAGAAAGCACTCAAGGAATCAGAAGAGAAGAAGAAGGCACTTCATGCCTTGGCACAGACGGATGGTCGGTGTAGGAAGTACTCAATTGAAGAGATTGAAGCTGCCACTGAGTTCTTTTCGGAATCCCGTAAGATCGGAGAGGGCGGTTACGGGCCCGTGTTCAAGTGTAATCTTGACCATACCCCCGTAGCAATCAAGGTTCTACGCCCGGATGCTGCTCAGGGAAGATCACAGTTTCAGAAAGAGGTTGAGGTATTAAGCTGCATACGTCATCCTAACATGGTTCTACTTCTTGGTGCCTGCCCCGAGTATGGTTGCTTGGTGTATGAGTACATGGCAAATGGGAGCTTAGAGGACTGTCTCTTTCGGAAAAGAAACATGCCGCCTTTATCATGGCAGCTCAGGTTCAGAATCGCAGCCGAAATTGGGACTAGTCTGTTGTTCCTCCACCAGGCTAAGCCCGAGCCATTAGTCCACCGTGATCTCAAACCAGCCAACATCCTCCTCGACAACAACTTCGTAAGTAAGATAAGTGATGTTGGTCTGGCTAGGCTGGTCCCACCTTCTGTGACTGACACTGCAACCCAGTATCGGATGACGTCAACAGCTGGTACATTCTGTTATATCGATCCGGAGTATCAACAAACTGGGATGTTGGGTGTCAAGTCTGACATATATTCTTTAGGAATCATGTTTCTACAAATGATAACGGCTAGACCCCCTATGGGTTTGACTCACCACATGGAACGGGCTATCGAAAGGGGAACTTTTGCTGACATGTTAGATCCGGTGGTGAGTGATTGGCCAATTGAGGAAGCCTTATTGTTTGCCAAGTTGGCACTCCAATGTTCGGAGTTGAGGCGTAAAGACCGGCCTGATCTAGGGAAGAGCGTGTTGCCAGAACTTAATAGATTGAGAGAGTTTGCTGAGAGCTCAATGAATGCAACAATGATGAGTAGTGCTACATCTTGCACACAAAACCACAGCCAGGTTTCCTTGCAGCTAGGAGCTACAAGTGATTCTCTGCCTCCACAATCCTCTGCTAGCTCAAGAAACCCATCTATGTGTAACTGA 1641 46.19 MFPSYYESQDSSKASAKVSSSLELDIDESFESMQFGRRSIDIVYPSDFSSISQESDRSSTSPQAIVSTPCFFSFHNAKIVNLLIRVLIIVLELQDDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAMELQKWKLEEERKLGEARQAEEAALAIADKEKAKSRAAIEAAEAAKRIAELESQKRITAEKKALKESEEKKKALHALAQTDGRCRKYSIEEIEAATEFFSESRKIGEGGYGPVFKCNLDHTPVAIKVLRPDAAQGRSQFQKEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDCLFRKRNMPPLSWQLRFRIAAEIGTSLLFLHQAKPEPLVHRDLKPANILLDNNFVSKISDVGLARLVPPSVTDTATQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQMITARPPMGLTHHMERAIERGTFADMLDPVVSDWPIEEALLFAKLALQCSELRRKDRPDLGKSVLPELNRLREFAESSMNATMMSSATSCTQNHSQVSLQLGATSDSLPPQSSASSRNPSMCN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13376518 13380059 - Conep04aG0192600.1 Cone4ag1867 436845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1867 546 ProSiteProfiles Protein kinase domain profile. 228 498 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1867 546 Gene3D Transferase(Phosphotransferase) domain 1 301 518 - -
Cone4ag1867 546 FunFam U-box domain-containing protein 51 301 501 - -
Cone4ag1867 546 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 200 300 - -
Cone4ag1867 546 Pfam Protein kinase domain 229 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1867 546 SUPERFAMILY Protein kinase-like (PK-like) 211 483 IPR011009 -
Cone4ag1867 546 SMART serkin_6 228 498 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1867 546 Coils Coil 120 152 - -
Cone4ag1867 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1867 546 Coils Coil 94 114 - -
Cone4ag1867 546 PANTHER OS02G0152300 PROTEIN 19 529 IPR051348 -
Cone4ag1867 546 MobiDBLite consensus disorder prediction 526 546 - -
Cone4ag1867 546 Gene3D Phosphorylase Kinase; domain 1 192 300 - -
Cone4ag1867 546 Coils Coil 154 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0006 Cone-Chr17:58363 Cone4ag1867 Cone-Chr4:13376518 1.83E-122 dispersed
Cone20ag1403 Cone-Chr20:8955612 Cone4ag1867 Cone-Chr4:13376518 1.64E-219 dispersed
Cone4ag0052 Cone-Chr4:270922 Cone4ag1867 Cone-Chr4:13376518 1.55E-117 dispersed
Cone4ag1867 Cone-Chr4:13376518 Cone5ag1151 Cone-Chr5:5185083 1.41E-69 dispersed
Cone17ag1090 Cone-Chr17:8122820 Cone4ag1867 Cone-Chr4:13376518 2.89E-56 wgd
Cone20ag0626 Cone-Chr20:3739895 Cone4ag1867 Cone-Chr4:13376518 1.02E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82807 PF05768 DUF836 1.80E-19 CL0172 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1867 - - - 0.0