Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1876 ATGGCTTTTTTCTTCCTCGGCATATCACTTGTAGGTTTAATACCACTCTTTATACTTTCTTATTATTTCTTAAGAAGGGTTAGTACTATTGCTACTAAGAACAGCAAAGCAGCCCCAGAAGCTTCTGGAGGATGGCCTATACTAGGTCACCTGCCCTTACTCGGAGGGCCTCAGACTCCCCATGCAATTTTAGGAGCCATGGCAGACAAGCACGGCCCAATATTCACCATAAGACTGGGTCTCAAGCCCACTGTAGTGGTCAGCAGTTGGGAGATGGCGAATGAATGCTTCTCCACCAACGATAGGTTCGTTTCCTCACGTCCAAAACTTGCGGGCGTGAAGCACATGGGCTATAACCACGCCATGTTCGGATTTGCAGAGTACGGACCACTTTGGCTTGAGATGCGGAAATTCGTCAACTTAGAGCTACTCTCCAAGCACCGGGTGGATCAACTTAAAGATTCAAGAATCTCTGATGTCAGATACTCGGTAAGAAATCTATATAAATTTTGGACCGAGGAAAGTAACGGTGCAGACCGGATTTCAATTGATCTGGAAAAGTGGTTTGGAGATCTGGCTTATGACATGGTTCTTAAGGCGGTCGTCGGGAAGAGGTACTCCGGTGGCACAACCGCGGAGGAGGAAGGAAAAGCAAGGCGGAATCAGAAGGCGCTGAAGGATTTCATGAACTTAATGGGGAAGTTTGTCGTATCGGATTGTATACCGTTTCTTGGGCTGTTTGATTTAGGCGGTTATGAGAAGGAAATGAAGAAGACTGCCAAAGAATTGGATCAGTTTCTGGAGGAATGGTTAGAAGAGCATAAGAGAAAGAAAGATTCAGGTGAGGCTAAAGGTGATGAAGACTTCATCTACATTATGCTCTCTACACTTAACGGCCAAAACGTCGCCGGTTTCGATGCCGATACAATTATCAAAGCTACATGTTTGAGTATGATACTAGGAGGCACGGACACAAGCACAGTGACATTAACATGGGCAATGTCTTTATTGCTGAATAATCCCGAAACGCTGAAAAAAGCACAAGAAGAGCTTGATGTTCAAGTTGGCAGGGGAAGACTAGTAGATGAATCGGACATTATTGCGTTGGTCTATATACAGGCAATAATTAAAGAGACTTTTCGCGTATATCCACCGGGACCATTATCAGGTCCACGTGTATTTACTGAGGATTGTTCTATAGGTGGATACCACGTCAGCAAAGGTACTCGACTGATAACTAATATCTGGAAGATCCAAACCGACCCACGAATATGGGAGGACCCGTTGGATTTCAAACCCGAGAGGTTTTTGACCAGCTGCAAGGATATTGACGTAAGGGGTAAACATTACGGGTTGATACCATTTGGAAGCGGTAGAAGGATTTGCCCTGGGATATCGTTCTCTCTTCAGGCAGTGAGCTTGACTCTAGCTTTGTTTCTTCAAGCGTTTGACGTAATGAATCCGTCAAATGACCCGATCGACATGTCGGAGAATTTTGGTTTAACAAATGCTAAAGCTACTCCTCTTCAAGTTGTCATTACACCACGCTTATCTTCTCATCTATATGATTAA 1572 44.53 MAFFFLGISLVGLIPLFILSYYFLRRVSTIATKNSKAAPEASGGWPILGHLPLLGGPQTPHAILGAMADKHGPIFTIRLGLKPTVVVSSWEMANECFSTNDRFVSSRPKLAGVKHMGYNHAMFGFAEYGPLWLEMRKFVNLELLSKHRVDQLKDSRISDVRYSVRNLYKFWTEESNGADRISIDLEKWFGDLAYDMVLKAVVGKRYSGGTTAEEEGKARRNQKALKDFMNLMGKFVVSDCIPFLGLFDLGGYEKEMKKTAKELDQFLEEWLEEHKRKKDSGEAKGDEDFIYIMLSTLNGQNVAGFDADTIIKATCLSMILGGTDTSTVTLTWAMSLLLNNPETLKKAQEELDVQVGRGRLVDESDIIALVYIQAIIKETFRVYPPGPLSGPRVFTEDCSIGGYHVSKGTRLITNIWKIQTDPRIWEDPLDFKPERFLTSCKDIDVRGKHYGLIPFGSGRRICPGISFSLQAVSLTLALFLQAFDVMNPSNDPIDMSENFGLTNAKATPLQVVITPRLSSHLYD 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13422523 13424360 + Conep04aG0193500.1 Cone4ag1876 436854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1876 523 FunFam Cytochrome P450 82C4 29 514 - -
Cone4ag1876 523 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 PANTHER CYTOCHROME P450 82C3-RELATED 18 519 IPR050651 -
Cone4ag1876 523 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 Pfam Cytochrome P450 43 502 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 Coils Coil 249 269 - -
Cone4ag1876 523 CDD CYP82 72 516 - -
Cone4ag1876 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cone4ag1876 523 Gene3D Cytochrome P450 30 521 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1876 523 SUPERFAMILY Cytochrome P450 44 516 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0736 Cone-Chr20:5045765 Cone4ag1876 Cone-Chr4:13422523 4.55E-148 dispersed
Cone4ag1872 Cone-Chr4:13411588 Cone4ag1876 Cone-Chr4:13422523 0 dispersed
Cone4ag1873 Cone-Chr4:13416510 Cone4ag1876 Cone-Chr4:13422523 3.37E-39 dispersed
Cone4ag1876 Cone-Chr4:13422523 Cone7ag1411 Cone-Chr7:10084772 2.50E-212 dispersed
Cone6ag1368 Cone-Chr6:10967695 Cone4ag1876 Cone-Chr4:13422523 2.48E-32 dispersed
Cone7ag1785 Cone-Chr7:11722440 Cone4ag1876 Cone-Chr4:13422523 6.65E-45 dispersed
Cone4ag1874 Cone-Chr4:13416786 Cone4ag1876 Cone-Chr4:13422523 3.03E-27 proximal
Cone4ag1875 Cone-Chr4:13417599 Cone4ag1876 Cone-Chr4:13422523 2.74E-38 tandem
Cone4ag1876 Cone-Chr4:13422523 Cone4ag1877 Cone-Chr4:13424752 1.95E-85 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1876 - - - 0.0