Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1878 ATGGCGCCGATTTCAAATGGAATCGAAGGGAATTTGAAGAGAGTCAACGCATCCAAAACGGGTTCGGATAAGGTTATCGTTGCCGTTATAGCAGAGAAGGTAATATCAAAGGCCGCATTAGCTTGGGCCCTTGCTCACGTCGTCCGTGCCGGAGACTGCATGACTCTTCTCGCCATCTTTCCCGTCGAGAAACCAAAGAGGAGATTCTGGAACTTCCCGATGTGGAGAAGCGATTGTGGTACCGGCGGCCGGATGAAGCTGCCGGATCGGATTTCGGAGATCTCCGAATCTTGTTCCAGGATGGCGCTTCAGTTTCGCAACCAGTTAGAGGTTAAAGTGAGGATTAAGGTGGTGTCAGGTTCGCCTGAAGGTGCTGTTGCTGCTGAAGCTAAGAGAAATGGAGTCCATTGGGTTGTGATGGACAAGAAATTGAAGCACGAGGTGAAGCATTGCCTGGAAGAACTAAGTTGCAACATTGTGACGATGAAAGGGTCCAAACCAAAAGTTCTCAGGCTTAATTTAGGGTTCTTACATGAACCACCCCAAACTCCCTTCTTTTCTGCCATTTCTACTCCATACCAGGATGTCACAAAGGTACAATCTCAGAGGATGAGTCTTTCTACCCCATTGAGCAGCCCTGACGAACCATGTACTTCTTACACAAGAACCTCAAGGGAAGGTTCAGAATCAAGCTTTGACACCTCAACTTCTCTTTTCTATGTATATGACCAAAACCCTCTTTTCGAAGGACCTCCCAAAAAAGATCACTCACCAATTGATCAGCCTAACAATGCAGACAATTCATCACCCGCCTCCGATCCAATTGGAGAAAGGGTAATATCTCTTTCAGCTGCCCCCACATCATCTCTAACTGTACATCCCAAAAGTGTATATTGGATTCCTCAACATCATAGGATCTCTCTCTCATCTCGAGAGACAAGAAATTCCCACGATAGTAGATCATTGAATACCAGAACTCCACGTCAGCATGCTATTAATGAAGGTAGTGGGGACAATTATTCACAAAGAAAGGACTACATCATCAACTCAAACATCAGGGATGCTGTCTCTTTGGGGAGAGCTTCTTCTGTACCTCCTCCTTTATGTTCAATATGTCAACACAAAGCTCCTGCCTTCGGAAAACCTCCGAGACAATTCTCTTACAATGACATAGAGGAATCTACAAATGGGTTCTCAGACATTAATTTCGTTGCAGAAGGTGGTTTTGGCATTGTTCACAGAGGGGTGTTAAGAGACGGTCAGGTGGTAGCAGTGAAGCAATTGAAATGTGGAGGCTTTCAAGCAGATACAGATTTTTGCAGAGAAGTGAGAGTGTTAAGTTGTGCACAACATAGAAATGTCGTGTTGCTGACAGGGTTTTGCATTCAAGGTAGGATGAGGCTATTGGTTTATGAGTTTATATGCAACAGTTCCTTGGACTTCCATTTGCACGGAAACAAGACTCATCTAGGTTGGCACTCTCGTGTAAAGATAGCAATAGGGGTAGCTCGTGGATTACGATATCTCCATGAAGATTGTAGAGTTGGTTGCATAGTTCATGGAGACCTTCGGCCTAATAATATACTCCTAACCCATGATTTTGAACCTTTGGTTGCTGATTTTGGGCTAGCTCGGTGGCATTCTGAGTGGTATGCTAGCACTGAGGACAGACTGATTGGAAGTACAGGGTATCTAGCACCAGAGTACATCAACAGTGGGATTGTATCACATAAAATAGACGTGTATGCATTTGGGATGATTTTATTAGAGCTCATAACTGGAAAAAGAGTAACCGAGCTGAAATACCCGGAGGGAAAGAAATTTATGTCCCAGTGGTTCCACCCGCTCTCCGCATTAGAAATGGATCAGTTACCAGCTAATAAATTACTAGACCCCTGCATGGCCTCAGAGCGATCACCAGATTTTCCCCATCAACTGCAGGCAATGGGCCGAGCTGCTTCCTTGTGCTTAAGTCTAGATCCCGAATCAAGACCGCCAATGTCTAAGGTGTTAAGTGTGCTAGAAGGAGGAGACCCAGCTGGTTTAGACTTCAACTCAGCCGGCTGTAGAAGTGGCCATTTGCGTGGTCTAAACTCTCACACAAGAATTGAGTCAATAAGAAGCCATTCTCGGAAGCTCTCACACTGA 2148 45.2 MAPISNGIEGNLKRVNASKTGSDKVIVAVIAEKVISKAALAWALAHVVRAGDCMTLLAIFPVEKPKRRFWNFPMWRSDCGTGGRMKLPDRISEISESCSRMALQFRNQLEVKVRIKVVSGSPEGAVAAEAKRNGVHWVVMDKKLKHEVKHCLEELSCNIVTMKGSKPKVLRLNLGFLHEPPQTPFFSAISTPYQDVTKVQSQRMSLSTPLSSPDEPCTSYTRTSREGSESSFDTSTSLFYVYDQNPLFEGPPKKDHSPIDQPNNADNSSPASDPIGERVISLSAAPTSSLTVHPKSVYWIPQHHRISLSSRETRNSHDSRSLNTRTPRQHAINEGSGDNYSQRKDYIINSNIRDAVSLGRASSVPPPLCSICQHKAPAFGKPPRQFSYNDIEESTNGFSDINFVAEGGFGIVHRGVLRDGQVVAVKQLKCGGFQADTDFCREVRVLSCAQHRNVVLLTGFCIQGRMRLLVYEFICNSSLDFHLHGNKTHLGWHSRVKIAIGVARGLRYLHEDCRVGCIVHGDLRPNNILLTHDFEPLVADFGLARWHSEWYASTEDRLIGSTGYLAPEYINSGIVSHKIDVYAFGMILLELITGKRVTELKYPEGKKFMSQWFHPLSALEMDQLPANKLLDPCMASERSPDFPHQLQAMGRAASLCLSLDPESRPPMSKVLSVLEGGDPAGLDFNSAGCRSGHLRGLNSHTRIESIRSHSRKLSH 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13429540 13433234 + Conep04aG0193700.1 Cone4ag1878 436856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1878 715 SUPERFAMILY Protein kinase-like (PK-like) 379 674 IPR011009 -
Cone4ag1878 715 PANTHER OS01G0750732 PROTEIN 200 675 IPR050885 -
Cone4ag1878 715 Pfam Protein tyrosine and serine/threonine kinase 404 673 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1878 715 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 26 143 - -
Cone4ag1878 715 MobiDBLite consensus disorder prediction 308 324 - -
Cone4ag1878 715 FunFam Os07g0541700 protein 474 560 - -
Cone4ag1878 715 MobiDBLite consensus disorder prediction 308 342 - -
Cone4ag1878 715 ProSitePatterns Tyrosine protein kinases specific active-site signature. 518 530 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1878 715 ProSiteProfiles Protein kinase domain profile. 398 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1878 715 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 370 473 - -
Cone4ag1878 715 Gene3D Transferase(Phosphotransferase) domain 1 475 680 - -
Cone4ag1878 715 MobiDBLite consensus disorder prediction 200 232 - -
Cone4ag1878 715 Gene3D Phosphorylase Kinase; domain 1 369 473 - -
Cone4ag1878 715 MobiDBLite consensus disorder prediction 247 275 - -
Cone4ag1878 715 CDD STKc_IRAK 404 676 - -
Cone4ag1878 715 MobiDBLite consensus disorder prediction 325 342 - -
Cone4ag1878 715 Gene3D HUPs 11 160 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1878 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0787 Cone-Chr4:4700713 Cone4ag1878 Cone-Chr4:13429540 2.84E-153 dispersed
Cone4ag1878 Cone-Chr4:13429540 Cone7ag1209 Cone-Chr7:8992308 2.31E-179 dispersed
Cone7ag1787 Cone-Chr7:11729437 Cone4ag1878 Cone-Chr4:13429540 1.80E-229 transposed
Cone4ag1878 Cone-Chr4:13429540 Cone7ag1786 Cone-Chr7:11727278 2.27E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g859 . Blo12g00921 . Bda03g00242 . Bpe04g00201 Bma04g00192 . . . . Cma09g00181 . . . Cpe06g00130 . . . . . . . . . . . . . . . Cone4ag1878 Cone7ag1787 . . Lsi04g01631 Csa03g04172 Chy04g00545 . . . . . . Bpe05g00345 . . . . Cmo09g00177 . . . Car09g00161 . . . . . . . . . Cla05g01971 . . . . . . . . . Cme04g00634
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006501 2 5 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82808 PF00582 Usp 5.40E-10 CL0039 Cone PK