Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1879 ATGCTGCCGGAGACAAAAGTCACGACTAGGTTCGAGGCCCCAAACTGCAGCGTCGAAAACTCTAACATAAGTTGCTACCCCGGCTCCAGCCCGAACGTTTCGGATGGATATATAGACTTCGATAGGGTGATGAGAAGTGGTTGCCGCTATCTCTCATCGTCAATTTCTTTCAGTAACAGCTCGTTTCTGGTTTCATTGGAGATTCAGACGATGGAGATTGGCTGGTGGTTGACGGGGACGTGCGATTGTGATCGGAACGCGGATTGTATCGATGTTTTGCTGCCGTCTAATGGTACTAGACTTGGATATCGTTGCCAGTGCTTTGGAGGCTTCTCCGGCGATGGATACTCAGCCGGAGCTGGTTGCCTGAAAGCTTCTTCCTCCCATTGCAACTTTTCTAAGTATCTCCACGGGGAATGCGGACGGAGCACGAAAGTCATCATCCTAATTGCTGGCATTGGTGCTGGAATTTTGATAGTGAGCTTAGGTTTGATATGCTGCTTTATCAGGCGAAAAAGATGGTCCGGGTCGAAATTCCAAGGCATCTCAAATCGGCAGATATCCGAAGCTACAGGGTCTTCTAGAATTTCAATATATGCTTACAAGGAAATAGAGAAAGCCACAGACAACTTCTCGGAAAAACAAAGGCTCGGAACAGGCGCCTATGGAACAGTCTATTCTGCAAAGCTACACAACGATGAATGGGTTGCCATTAAAAGGATCAGAAACAGAGACACGGACGGGATCAATCAAGTCATGAATGAAATCAAACTCATTTCTTCAGTAAACCACCCGAATCTTGTCCGTCTCTTGGGTTGTTCTATAGACTACGGTGAGCAGATCCTTGTCTATGAATTCATGCCTAATGGAACATTATCTCAACATTTACAAAGAGAAATAGGAGATGGGCTTGTTTGGCCCATTCGGGTCGCCATTGCTACGGAAACAGCCCAAGCAATAGCCCATCTTCACTCCTCGATCACACCTCCGATATTTCATAGAGATATTAAGTCAAGCAATATACTGTTGGATTACAACTTCAAGTCGAAAGTTGCAGATTTTGGTCTTTCAAGACTTGGTATGATGGAAATTTCCCATATATCAACGGCCCCGCAAGGAACTCCAGGCTATCTTGACCCTCAATACCATCAAGATTTCCATCTATCCGATAGAAGTGATGTGTATAGCTTTGGTGTGGTTTTGATAGAGATCATAACTGCGTTGAAAGTTGTGGATTTCTGTCGTCAAGCAAATGAGGTGAATCTAGCAGCTCTTGCGATTGATAGGATTTCAAACGGGCGTGTAGATGAGATTATAGACCCGTTTCTGAAGCTGAATCAAGATGCTTGGACCCTTTTAACATTACAAAAGGTAGCTGAGCTTGCATTTAGATGTTTAGCCTTTCACAGGGATCTGAGGCCCTCTATGTTAGAAGTGGCAGCTGAATTACAACAAATTGGTGAAACTAAGTTGGTTTCTTCTTCCGAACCGCACCGTATTATATCTTTTTCGGAGGTATCCAGTACTCGCTCGCTTTCTTCAAATATGAGCGATAAATTGTTGAGTGAGGCAGGAAAGAGTGCATTGGAGAGACTAGATAAAGCTCCATCTCATGTGCAAACTGAAGCTGATGATAGTTTGAAGCCTGAGGAATCAAAGGCGAAGGATCGTTCACCAGTTTCAATTCAGGATCCATGGTTGAGTGAACATAGCTTGTGA 1719 44.39 MLPETKVTTRFEAPNCSVENSNISCYPGSSPNVSDGYIDFDRVMRSGCRYLSSSISFSNSSFLVSLEIQTMEIGWWLTGTCDCDRNADCIDVLLPSNGTRLGYRCQCFGGFSGDGYSAGAGCLKASSSHCNFSKYLHGECGRSTKVIILIAGIGAGILIVSLGLICCFIRRKRWSGSKFQGISNRQISEATGSSRISIYAYKEIEKATDNFSEKQRLGTGAYGTVYSAKLHNDEWVAIKRIRNRDTDGINQVMNEIKLISSVNHPNLVRLLGCSIDYGEQILVYEFMPNGTLSQHLQREIGDGLVWPIRVAIATETAQAIAHLHSSITPPIFHRDIKSSNILLDYNFKSKVADFGLSRLGMMEISHISTAPQGTPGYLDPQYHQDFHLSDRSDVYSFGVVLIEIITALKVVDFCRQANEVNLAALAIDRISNGRVDEIIDPFLKLNQDAWTLLTLQKVAELAFRCLAFHRDLRPSMLEVAAELQQIGETKLVSSSEPHRIISFSEVSSTRSLSSNMSDKLLSEAGKSALERLDKAPSHVQTEADDSLKPEESKAKDRSPVSIQDPWLSEHSL 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13434443 13437108 + Conep04aG0193800.1 Cone4ag1879 436857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1879 572 SMART serkin_6 211 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1879 572 MobiDBLite consensus disorder prediction 531 558 - -
Cone4ag1879 572 Gene3D Transferase(Phosphotransferase) domain 1 287 505 - -
Cone4ag1879 572 FunFam Wall-associated receptor kinase-like 20 287 496 - -
Cone4ag1879 572 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 70 569 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cone4ag1879 572 MobiDBLite consensus disorder prediction 531 572 - -
Cone4ag1879 572 Gene3D Laminin 80 117 - -
Cone4ag1879 572 FunFam Wall-associated receptor kinase-like 14 178 286 - -
Cone4ag1879 572 ProSitePatterns Protein kinases ATP-binding region signature. 217 239 IPR017441 GO:0005524(InterPro)
Cone4ag1879 572 Pfam Protein kinase domain 212 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1879 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1879 572 SUPERFAMILY Protein kinase-like (PK-like) 190 483 IPR011009 -
Cone4ag1879 572 ProSiteProfiles Protein kinase domain profile. 211 501 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1879 572 Gene3D Phosphorylase Kinase; domain 1 182 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0814 Cone-Chr19:6491436 Cone4ag1879 Cone-Chr4:13434443 3.34E-81 dispersed
Cone4ag1879 Cone-Chr4:13434443 Cone9ag1279 Cone-Chr9:9578313 8.13E-208 dispersed
Cone17ag1312 Cone-Chr17:9314587 Cone4ag1879 Cone-Chr4:13434443 6.99E-226 wgd
Cone20ag0161 Cone-Chr20:701412 Cone4ag1879 Cone-Chr4:13434443 1.75E-87 wgd
Cone4ag1879 Cone-Chr4:13434443 Cone7ag1788 Cone-Chr7:11731708 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82809 PF03151 TPT 2.70E-50 CL0184 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1879 - - - 0.0