Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1880 ATGGCGGTAACATATCTAGCTTTTCCTTCTATTCTACCGCCAACAAGCGGATCGTGTACTACTAAAACGTTCACGCACAATAGTAATAATGTCCGTCTGATCTTGGCTTCTTCGCCACATGTGGAAGAACCCACAGAACTACCCATCAGAAAAATCCCAGGCAACTATGGCCTCCCTTTCATAGGTCCCATCAAAGATCGGCTCGATTTCTTCTACAACCAAGGCAAAGACGAGTACTTCAAATCACGCATCCAAAAGTACCAATCAACAGTGTTCAGAGCAAACATGCCTCCGGGCCCATTCATTTCGCCCAATCGCAACGTCGTCATTTTGCTCGACGGCAAGAGCTTCCCCGTACTCTTCGACGTCACCAAGGTCGAAAAGAAGGACCTTTTCACCGGAACTTTCATGCCGTCAACAGACTTCACCGGCGGTTACCGTGTCCTCTCTTACCTTGACCCATCCGAACCGAAACACGGGAAGTTAAAACGACTCATGTTCTTCCACCTCAAGGCTCGTCGCGACGAGGTGATCCCTCAATTCCATTTCAGCTATACCGAGCTCTTTGAATCGCTCGAAAACGACGTCTCATCGGAAGGTAAAGCTAATTTCGGAGAAGCCAACGATCGCGCTGCGTTCAACTTCTTGGCTCGGTCTCTCTATGGAGTTGACCCGGCGGTGACCAAACTCGGTCTCGAAGGTCCGGGTTTGATCGGCAAATGGGTGCTCTTCCAGCTCAGCCCGCTTCTGACACTAGGCCTTCCGAAGATTCTAGAAGATCTTCTCATCCACACTTTCCCTCTTCCTTCATTCCTCGTCAAATCCGACTACAATCGCCTTTACGATTTCTTCTACGAGTCGCCTGGTTTTTTACTAGAGGAAGGGGAGAGACTCGGCCTATCGAAAGAGGAAACGTGTCACAACCTCCTGTTCGCCACGTGTTTCAATTCATTCGGAGGTATGAAGATCTTCTTCCCCAATCTACTAAAATGGATCGGACGAGCAGGAGTCAAGATCCACACCCAGCTAGCCGAAGAGATCCGATCCGCCGTCAGATCCAACGGTGGAAAAATCACGATGGCTGCCATCGAACAGCTTCCATTAACGAAATCCGTCGTGTACGAGTCTTTACGTATCGAACCACCGGTTCCGTTGCAGTACGGGAAAGCAAAGCGCGATCTTCTGATCGAGAGCCACGACGCAGCGTTTAAGGTGAAAAAAGGGGAGTTGATATTCGGTTACCAACCGTTTGCTACGAAGGATCCGAAAATATTCGAAAGATCAGAAGAGTTTGTAGCGGATCGGTTCGTGGGGGAGGAAGGGGAGAAGTTGCTCAAGCACGTGCTGTGGTCAAACGGACCAGAGTCAGAGAATCCGACGGTGGGGAATAAACAGTGTGCAGGGAAAGATTTCGTAGTGTTAGTCTCGAGGCTTTTGGTGATAGAGTTGTTTTTGCGGTATGATTCGATTGAGATTGAAGTCGGAACGTCGCCGTTAGGGGCGGCCGTTACTGTAACTTCACTGAAGAAATCGAGTTTTTGA 1542 49.29 MAVTYLAFPSILPPTSGSCTTKTFTHNSNNVRLILASSPHVEEPTELPIRKIPGNYGLPFIGPIKDRLDFFYNQGKDEYFKSRIQKYQSTVFRANMPPGPFISPNRNVVILLDGKSFPVLFDVTKVEKKDLFTGTFMPSTDFTGGYRVLSYLDPSEPKHGKLKRLMFFHLKARRDEVIPQFHFSYTELFESLENDVSSEGKANFGEANDRAAFNFLARSLYGVDPAVTKLGLEGPGLIGKWVLFQLSPLLTLGLPKILEDLLIHTFPLPSFLVKSDYNRLYDFFYESPGFLLEEGERLGLSKEETCHNLLFATCFNSFGGMKIFFPNLLKWIGRAGVKIHTQLAEEIRSAVRSNGGKITMAAIEQLPLTKSVVYESLRIEPPVPLQYGKAKRDLLIESHDAAFKVKKGELIFGYQPFATKDPKIFERSEEFVADRFVGEEGEKLLKHVLWSNGPESENPTVGNKQCAGKDFVVLVSRLLVIELFLRYDSIEIEVGTSPLGAAVTVTSLKKSSF 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13437908 13439661 - Conep04aG0193900.1 Cone4ag1880 436858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1880 513 Gene3D Cytochrome P450 47 513 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1880 513 CDD CYP74 81 506 - -
Cone4ag1880 513 FunFam Allene oxide synthase, chloroplastic 47 513 - -
Cone4ag1880 513 PANTHER CYTOCHROME P450 26 51 487 - GO:0009535(PANTHER)|GO:0009695(PANTHER)|GO:0009941(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Cone4ag1880 513 Pfam Cytochrome P450 339 486 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1880 513 PRINTS E-class P450 group IV signature 366 382 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1880 513 PRINTS E-class P450 group IV signature 419 437 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1880 513 PRINTS E-class P450 group IV signature 466 484 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone4ag1880 513 SUPERFAMILY Cytochrome P450 48 495 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1126 Cone-Chr12:9073403 Cone4ag1880 Cone-Chr4:13437908 6.77E-182 wgd
Cone17ag1313 Cone-Chr17:9317475 Cone4ag1880 Cone-Chr4:13437908 1.30E-292 wgd
Cone20ag0160 Cone-Chr20:698999 Cone4ag1880 Cone-Chr4:13437908 3.77E-295 wgd
Cone4ag1880 Cone-Chr4:13437908 Cone7ag1789 Cone-Chr7:11734720 0 wgd
Cone4ag1880 Cone-Chr4:13437908 Cone8ag1170 Cone-Chr8:10108017 8.98E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1880 K01723 - sly:606711 756.903