Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1886 ATGGGTTGGATTAGCAAAATATTTAAAGTCGGTTCAAGCCATAACGTTTCAGAAGGGCACCACAATGATAGATATGGTGATAATCCAAATTACCACGCGCCTTCTACTTCACGGGATTTGAGGACCGAAAACGAAGATATAGACCGCGCTATTGCTCTGTCTCTTGTAGAAGAAAATCAAAAACGGAAAAATGTGATTGCAACTCGGGATTTTCAATTGGAAGAAGATGAACAACTTGCTAGAGCCATACAAGAAAGTCTAAATGCAGAGTCTTCTCCTTCGCCTAGTCCTCGGCATACAAATGGAAATATGCATCGACCTTTTCCAGTCCACTTTCCTACAGGGCCCAGAATATGTGCTGGCTGCCATGTTGACCTTGGTTATGGACATTATCTCAACTGCTTAAATTCATTTTGGCATCCAGAATGCTTCCGTTGTCGTTCTTGCAACCTACCGATTTTTGACATGGAGTTTTCTACATCTGGGAATCACCCTTATCATAAATCTTGCTACCGAGAAAACTACCATCCAAAATGTGATGTGTGCAAGCATTTTATTCCAACAAATCACTCAGGGCTTATTGAGTACAGGGCACATCCCTTTTGGATACAGAAATACTGCCCATCTCACGAACGAGATGGAACTGCTCGTTGCTGCAGTTGTGAACGACTCGAGCCAAAAGATACAAAATATATTGCTCTTAATGATGGTAGAAATCTATGCCTTGAATGTCTGGACTCTGCAATCATGGATACGAGTGAGTGTCAACCGCTTTATCGTGAGATTCTAGAGTTTTATAATGGTTTGAATATGAGATTGGAGCAGCAAGTTCCATTACTTTTGGTTGAAAGACAGGCATTGAATGAAGCTAGAGAAGGAGAAAAGAACGGCCATCACCAGATGCCTGAAACAAGAGGTCTCTGCCTTTCCGAGGAGCAAACTATACGTACTATTTTAAAGCGGCCTAGATTTGGACTAGGAAACAGAGAAATGATATCGGAGCCCTATAAACTAACACGCCGCTGTGAGGTCACAGCAATTCTTGTCCTTTATGGTCTTCCAAGGTTGCTTACCGGTTCAATCCTAGCTCATGAGATGATGCATGCATGGCTTCGCCTTAAAGGTATAAGAGCTCTAAGTCAAGACGTGGAAGAAGGCATATGTCAGGTTCTTGCACATATGTGGTTGAATTCTCAGCTCATAATTTCTGGGCCCGAAAGGAGCAGCATGGCATCTACCTCATCTTATTCAGCTTCTTCTACTTCCAGAAAAAGTACAAGATCTCAATTTGACAGGAAACTTGGGGAGTTCTTTCGGCACCAGATTGAAGCCGATACATCTCCAGTTTACGGAAATGGCTTTCAAGCGGGTCAAAATGCAATATTATCTTCCTACTCTGGCCTTTTCTCTCATTTCACTCTTCATAGATCATTCCACGCTTCTCGGATTCTCCGCTGGAAGCTCCGAGACGAATCCAAGATGAACCGACCTGAGTTGGTAAGCCGGATCTCCCGCCTTATCGTCTCACAACGCTTCGATGCTCTCAACAGGCTCGCCGATGAGTTTTCAGACGAAGTCTTGGACTCCATTCTTCGTAGGTTCAGGATGTACCCTGACGCTTGCTTACAGTTTTTCGAGTTGGCCTCGAAGCGACTGAAATCCAGGCCCAATATCAAGTCGTATTGTATGATCGTCCATATATTAGCTAGAGCTCGATTATACGACCAGACTAGGGCTTACTTAAACGAATTGGTAGATCTCTGTAAAAACAATTACACGGCATTTATCGTTTTTGATGAGCTTGAAAAGGTTTATCAGGAGTTTACGTTTTCGCCCACAGTATTTGATATGATCTTGAAGGTATATGCTGAGAAAGGTATGACAAAGTATGCACTCCAGGTGTTTGATAATATGGGGAAGTTTTCTCGAGTTCCGAGCTTGAGGTCTTGCAATACTTTGTTGAGTGATCTGGTAAAAAGTGATGAAGCATATACTGCTATTCTGGTTTACGAACAAATAACTGGCCTAGGAATTATCCCTGATATGTATAGTTTGTACAATAATGGTGAAAGCATATTGTAA 2082 42.36 MGWISKIFKVGSSHNVSEGHHNDRYGDNPNYHAPSTSRDLRTENEDIDRAIALSLVEENQKRKNVIATRDFQLEEDEQLARAIQESLNAESSPSPSPRHTNGNMHRPFPVHFPTGPRICAGCHVDLGYGHYLNCLNSFWHPECFRCRSCNLPIFDMEFSTSGNHPYHKSCYRENYHPKCDVCKHFIPTNHSGLIEYRAHPFWIQKYCPSHERDGTARCCSCERLEPKDTKYIALNDGRNLCLECLDSAIMDTSECQPLYREILEFYNGLNMRLEQQVPLLLVERQALNEAREGEKNGHHQMPETRGLCLSEEQTIRTILKRPRFGLGNREMISEPYKLTRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGIRALSQDVEEGICQVLAHMWLNSQLIISGPERSSMASTSSYSASSTSRKSTRSQFDRKLGEFFRHQIEADTSPVYGNGFQAGQNAILSSYSGLFSHFTLHRSFHASRILRWKLRDESKMNRPELVSRISRLIVSQRFDALNRLADEFSDEVLDSILRRFRMYPDACLQFFELASKRLKSRPNIKSYCMIVHILARARLYDQTRAYLNELVDLCKNNYTAFIVFDELEKVYQEFTFSPTVFDMILKVYAEKGMTKYALQVFDNMGKFSRVPSLRSCNTLLSDLVKSDEAYTAILVYEQITGLGIIPDMYSLYNNGESIL 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13470594 13474661 + Conep04aG0194700.1 Cone4ag1886 436864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1886 693 PANTHER PROTEIN DA1-RELATED 2 1 465 IPR045218 GO:0043130(PANTHER)
Cone4ag1886 693 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 111 144 - -
Cone4ag1886 693 Pfam Protein DA1 268 462 IPR022087 -
Cone4ag1886 693 MobiDBLite consensus disorder prediction 13 43 - -
Cone4ag1886 693 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 145 200 - -
Cone4ag1886 693 Gene3D Tetratricopeptide repeat domain 536 687 IPR011990 GO:0005515(InterPro)
Cone4ag1886 693 ProSiteProfiles LIM domain profile. 117 177 IPR001781 -
Cone4ag1886 693 ProSitePatterns LIM zinc-binding domain signature. 119 153 IPR001781 -
Cone4ag1886 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Cone4ag1886 693 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
Cone4ag1886 693 Gene3D Cysteine Rich Protein 111 177 - -
Cone4ag1886 693 CDD LIM_DA1 119 171 - -
Cone4ag1886 693 MobiDBLite consensus disorder prediction 85 101 - -
Cone4ag1886 693 SMART uim 74 93 IPR003903 -
Cone4ag1886 693 SMART uim 42 61 IPR003903 -
Cone4ag1886 693 SMART lim_4 118 170 IPR001781 -
Cone4ag1886 693 Pfam LIM domain 119 174 IPR001781 -
Cone4ag1886 693 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 42 61 IPR003903 -
Cone4ag1886 693 MobiDBLite consensus disorder prediction 85 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1886 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1886 Cone-Chr4:13470594 Cone5ag0235 Cone-Chr5:997113 9.76E-174 dispersed
Cone7ag1798 Cone-Chr7:11775860 Cone4ag1886 Cone-Chr4:13470594 1.46E-120 transposed
Cone17ag1316 Cone-Chr17:9329308 Cone4ag1886 Cone-Chr4:13470594 1.35E-224 wgd
Cone20ag0158 Cone-Chr20:690007 Cone4ag1886 Cone-Chr4:13470594 1.44E-243 wgd
Cone4ag1886 Cone-Chr4:13470594 Cone7ag1797 Cone-Chr7:11772289 3.16e-315 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46061 PF00501 AMP-binding 2.70E-103 CL0378 Cone TR