Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1888 | ATGGCAAGTGGGTTTGGGGAATCAACAAGCAAGCCTCCCCAAAATCCATCTTGCTGTACTAACAGTGAAGCCGGTAATTTCGAGTGCAACATTTGCTTCGACTTAGCTCAAGATCCAATTGTAACTTTGTGTGGCCATCTCTTCTGTTGGCCTTGCCTTTACAAATGGCTCCATATTCACTCCCATTCTCAAGAATGCCCTCTTTGCAAAGCTATTGTAGAAGAAGAGAAATTGGTCCCTTTATATGGTAGAGGAAAGACATCAACTGACCCTAGATCAAAATCAATTCCGGGCATTAATATCCCAAACCGTCCGGCAGGTCAGAGACCTGAAACGGCTCCTCAACCAGAACCTAACCATTTTCCTCAGAACGGATTTGGATTCATGGGAGGGTTAGGAGGGTTGGGAGGGGGGTTTGCTCCATTGGCAACTACTCGGCTCGGGAATTTTACATTTTCTGCAGCTTTTGGTGGTCTGATTCCGTCCTTATTTAACCTTCATTTGCACGGGTATCCTAATCCAACCATGTATGGTGCCTCTCCTACTTTCCCTTATGAGTTTTCTAGTCCTTATCGTGGTGGTGGCCTTTACGGACTGAGATACTATAACCAGCATAGCTTGGGTCAAGGACAGCAAGACTATTACCTGAAGAGGCTGCTTTTGTTTATCGCTTTTTGCGTTCTTCTTGCTCTGATTTGGCAATAG | 705 | 45.25 | MASGFGESTSKPPQNPSCCTNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHIHSHSQECPLCKAIVEEEKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPETAPQPEPNHFPQNGFGFMGGLGGLGGGFAPLATTRLGNFTFSAAFGGLIPSLFNLHLHGYPNPTMYGASPTFPYEFSSPYRGGGLYGLRYYNQHSLGQGQQDYYLKRLLLFIAFCVLLALIWQ | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13476940 | 13478653 | - | Conep04aG0194900.1 | Cone4ag1888 | 436866 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1888 | 234 | ProSitePatterns | Zinc finger RING-type signature. | 44 | 53 | IPR017907 | - | |
Cone4ag1888 | 234 | SUPERFAMILY | RING/U-box | 26 | 82 | - | - | |
Cone4ag1888 | 234 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 81 | IPR013083 | - | |
Cone4ag1888 | 234 | SMART | ring_2 | 29 | 69 | IPR001841 | - | |
Cone4ag1888 | 234 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 21 | 171 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Cone4ag1888 | 234 | MobiDBLite | consensus disorder prediction | 83 | 117 | - | - | |
Cone4ag1888 | 234 | CDD | RING-HC_AtRMA-like | 27 | 71 | - | - | |
Cone4ag1888 | 234 | ProSiteProfiles | Zinc finger RING-type profile. | 29 | 70 | IPR001841 | - | |
Cone4ag1888 | 234 | Pfam | Zinc finger, C3HC4 type (RING finger) | 29 | 69 | IPR018957 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0082 | Cone-Chr12:434239 | Cone4ag1888 | Cone-Chr4:13476940 | 6.74E-98 | dispersed | |
Cone4ag1888 | Cone-Chr4:13476940 | Cone8ag0084 | Cone-Chr8:438507 | 5.41E-95 | dispersed | |
Cone17ag1319 | Cone-Chr17:9339349 | Cone4ag1888 | Cone-Chr4:13476940 | 3.64E-77 | wgd | |
Cone20ag0156 | Cone-Chr20:683521 | Cone4ag1888 | Cone-Chr4:13476940 | 2.65E-70 | wgd | |
Cone4ag1888 | Cone-Chr4:13476940 | Cone7ag1799 | Cone-Chr7:11780316 | 1.92E-161 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1888 | K10666 | - | rcu:8260936 | 352.058 |