Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1888 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAAGCCTCCCCAAAATCCATCTTGCTGTACTAACAGTGAAGCCGGTAATTTCGAGTGCAACATTTGCTTCGACTTAGCTCAAGATCCAATTGTAACTTTGTGTGGCCATCTCTTCTGTTGGCCTTGCCTTTACAAATGGCTCCATATTCACTCCCATTCTCAAGAATGCCCTCTTTGCAAAGCTATTGTAGAAGAAGAGAAATTGGTCCCTTTATATGGTAGAGGAAAGACATCAACTGACCCTAGATCAAAATCAATTCCGGGCATTAATATCCCAAACCGTCCGGCAGGTCAGAGACCTGAAACGGCTCCTCAACCAGAACCTAACCATTTTCCTCAGAACGGATTTGGATTCATGGGAGGGTTAGGAGGGTTGGGAGGGGGGTTTGCTCCATTGGCAACTACTCGGCTCGGGAATTTTACATTTTCTGCAGCTTTTGGTGGTCTGATTCCGTCCTTATTTAACCTTCATTTGCACGGGTATCCTAATCCAACCATGTATGGTGCCTCTCCTACTTTCCCTTATGAGTTTTCTAGTCCTTATCGTGGTGGTGGCCTTTACGGACTGAGATACTATAACCAGCATAGCTTGGGTCAAGGACAGCAAGACTATTACCTGAAGAGGCTGCTTTTGTTTATCGCTTTTTGCGTTCTTCTTGCTCTGATTTGGCAATAG 705 45.25 MASGFGESTSKPPQNPSCCTNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHIHSHSQECPLCKAIVEEEKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPETAPQPEPNHFPQNGFGFMGGLGGLGGGFAPLATTRLGNFTFSAAFGGLIPSLFNLHLHGYPNPTMYGASPTFPYEFSSPYRGGGLYGLRYYNQHSLGQGQQDYYLKRLLLFIAFCVLLALIWQ 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13476940 13478653 - Conep04aG0194900.1 Cone4ag1888 436866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1888 234 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Cone4ag1888 234 SUPERFAMILY RING/U-box 26 82 - -
Cone4ag1888 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 81 IPR013083 -
Cone4ag1888 234 SMART ring_2 29 69 IPR001841 -
Cone4ag1888 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 21 171 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cone4ag1888 234 MobiDBLite consensus disorder prediction 83 117 - -
Cone4ag1888 234 CDD RING-HC_AtRMA-like 27 71 - -
Cone4ag1888 234 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Cone4ag1888 234 Pfam Zinc finger, C3HC4 type (RING finger) 29 69 IPR018957 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0082 Cone-Chr12:434239 Cone4ag1888 Cone-Chr4:13476940 6.74E-98 dispersed
Cone4ag1888 Cone-Chr4:13476940 Cone8ag0084 Cone-Chr8:438507 5.41E-95 dispersed
Cone17ag1319 Cone-Chr17:9339349 Cone4ag1888 Cone-Chr4:13476940 3.64E-77 wgd
Cone20ag0156 Cone-Chr20:683521 Cone4ag1888 Cone-Chr4:13476940 2.65E-70 wgd
Cone4ag1888 Cone-Chr4:13476940 Cone7ag1799 Cone-Chr7:11780316 1.92E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1888 K10666 - rcu:8260936 352.058