Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1892 ATGACGTCGGAAGGAGTAATGTCGGCGTCGGCGAGTAGGAGGAAGCCGTCGTGGAGAGAGAGGGAGAACAACAGGAGGAGGGAAAGGAGAAGGAGAGCTATAGCGGCGAAGATATATGCAGGGCTTAGAGCTCAGGGGAACTATAATTTGCCTAAGCACTGTGATAACAACGAAGTGCTTAAAGCTCTCTGTGTTGAAGCTGGTTGGACTGTCGAAGATGACGGCACTACCTATCGCAAGGGATGCAAGCTACCCCCAAGTGACATTGCGGGAACATCCACTAAAATCACTCCATTTTCCTCCCTGAATCCGAGTCCATTATCTTCGTTATTTCCAAGCCCAATTCCTTCCTATCAAGTCAGTCCCTCCTCCTCCTCCTTCCCAAGTCCATCTCGTTTCGATGCCAGCAACCCTTCTAATCTCATCCCCTATCTTCGCCAAGCCATTCCAACCTCTCTTCCGCCTTTACGCATATCTAACAGTGCTCCTGTAACTCCTCCCGTCTCTTCCCCAACATCAAAGAATCCCAAGCCTATACCCAGTTGGGAAGCTATTGCTAAAGAATCCATGCTATCATTAAACTACCCTTACTTTGCTGTATCTGCTCCAGCTAGCCCAACCCGTCACCGGATTCATACTCCGGCCACTATCCCTGAATGTGACGAGTCTGATTCGTCCACGGTCGATTCTGGCCATTGGGTAAATTTCCAGTCATATGCACACTATACGTCTGTAATGCCCCCATCTCCAACTTTTAACCTCGTGAAACCTGTGGCTCAGCCTAACTTGGGGAATAATGCAATCAATGAAAGAAAAAGGGCCAATGAGTCTGTGTTCGAAGGTAATAAGGTGAAGCCATGGCAAGGGGAGAGAATTCATGAGGTTAGATTGGATGATTTGGAGCTCACTCTTGGAAGTGGTAGGACTCAGAGTTAG 936 48.4 MTSEGVMSASASRRKPSWRERENNRRRERRRRAIAAKIYAGLRAQGNYNLPKHCDNNEVLKALCVEAGWTVEDDGTTYRKGCKLPPSDIAGTSTKITPFSSLNPSPLSSLFPSPIPSYQVSPSSSSFPSPSRFDASNPSNLIPYLRQAIPTSLPPLRISNSAPVTPPVSSPTSKNPKPIPSWEAIAKESMLSLNYPYFAVSAPASPTRHRIHTPATIPECDESDSSTVDSGHWVNFQSYAHYTSVMPPSPTFNLVKPVAQPNLGNNAINERKRANESVFEGNKVKPWQGERIHEVRLDDLELTLGSGRTQS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13494607 13496551 + Conep04aG0195300.1 Cone4ag1892 436870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1892 311 MobiDBLite consensus disorder prediction 14 29 - -
Cone4ag1892 311 MobiDBLite consensus disorder prediction 160 179 - -
Cone4ag1892 311 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 12 310 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cone4ag1892 311 MobiDBLite consensus disorder prediction 1 30 - -
Cone4ag1892 311 Pfam BES1/BZR1 plant transcription factor, N-terminal 12 136 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0761 Cone-Chr12:7015882 Cone4ag1892 Cone-Chr4:13494607 9.33E-95 dispersed
Cone4ag1892 Cone-Chr4:13494607 Cone8ag0795 Cone-Chr8:7987106 1.45E-90 dispersed
Cone4ag1892 Cone-Chr4:13494607 Cone7ag1804 Cone-Chr7:11802434 7.72E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46062 PF00651 BTB 3.20E-19 CL0033 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1892 K14503 - csv:101219853 392.119