Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1898 ATGATGGAGGAGGAAGAAAGTTCTTCACCAGTGCCGGTTTCTCCAGCTAGTAGAGAAGCGGAACACGTTTCTTCTCCAAGTTGTAAAATCGAGCAGGGGGAATTAGCTCTACTGAAGAAGAAGCGAAACCTCCCTGGAATGCCAGATCCGGATGCGGAAGTGATCGCTTTGTCCCCTAAAACCTTGCTGGCGACAAACCGTTTCGTGTGTGAGATCTGCAACAAAGGTTTCCAGCGAGACCAGAACTTGCAGCTCCACCGCCGTGGCCATAACCTTCCGTGGAAGCTCCGGCAACGAACAAGCAAGGAGGTGAGAAAACGGGTCTACGTTTGTCCGGAGGCTTCCTGCGTACACCACAACCCATCGAGAGCTCTAGGCGATCTCACCGGCATAAAGAAGCATTTCTCTAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCCAAGAAATACGCCGTATTGTCCGATTGGAAAGCGCACATGAAAACCTGCGGAACCAGAGAGTATAAATGCGACTGTGGCACTTTGTTTTCTAGGAGGGATAGCTTTATTACACACAGAGCTTTCTGCACTGCCTTAGCTGAGGAAAGTGCTCCAGTCCAAGCGCAGACCAGTAATACTAGATCAGAGGAGAACGATACGACTATGAACGTAGTAGCTGTCGTAGCCTCCCCACCTCCGCCACCTCTTACTCCGTCGACCTCTGTGGTGTCGCCAGCGCTGTCCATTCAGAGCTCAGAGTTGCCGGAGATTCCAGTCGGAGTTTCTTCACCAAGACCAACAGCGACAACATGCTTACCAATCGCCACTATCACCACGAGCTCAATCGCAGCCAGCAATAGTACAAGTACTAGTGGCAGCAGCAATAGCACTGTGTTGGCTAGTGTATTCGCCCCTTCCTCCACGACATCAAATGTCCCACAGCCAATCCAAACAAGATCAGAACCATCTCCTTCATTCTCCACCCTCATGTCCTCCTTAACCCGCTCAGATATTCACCCAACAAGTACTCTTCCCAACGTACCCACCGTAGAACCCACAACCCTTTCCCTCTCCACTTCTCTATATCTCTCCAGCCAAAGCCCCTCCTTTTATGCCCCGCCTGATTTAGACCACCACCGCCGTTACGCTGCCGCTCAATGTCAGCAGCCTCCGACCATGTCCGCGACGGCGCTGCTACAGAAGGCAGCGCAGATAGGTGCTGCTGCTTCGAATGCGACGTCGCTTCGTGGGTTTGGACTTGCTCTGTCCTCTTCGTACGGTCAAGATAATTGCAGTACTGGTACTGGTGGAGGTCAGTGGGACAGGGGCAACGCCAGTAGCAGTAACTCGTTGGCTGTTGGGCTTGGGCTTGGGCTTGGGCTTCGGTCTGGGTCTGGTTTGTCTGATCTGATGATGAGTCCATCCTCCACTTTTGGGAGTCAGCTGATGACGCGCGATCTTCTTGGGCTAGGAATGGCGGGTAGTGGACCAGGCGGTCCGGTGGCTTCTCGTCCACGTGGACTTTTAGCTTTACTCACCCCCTTTGACGGTAGCTTCAATGTCACCGCACCTACACCGTATAGAGGAGGAGATGACGGTGGCGGGAGCCCTTCCAGAGACGCCTGGGATGGTGGTCCACCGCCAGATAGAAAACCCAGTGGGCCATCTTTTCTATAA 1665 53.27 MMEEEESSSPVPVSPASREAEHVSSPSCKIEQGELALLKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEASCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCERCSKKYAVLSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCTALAEESAPVQAQTSNTRSEENDTTMNVVAVVASPPPPPLTPSTSVVSPALSIQSSELPEIPVGVSSPRPTATTCLPIATITTSSIAASNSTSTSGSSNSTVLASVFAPSSTTSNVPQPIQTRSEPSPSFSTLMSSLTRSDIHPTSTLPNVPTVEPTTLSLSTSLYLSSQSPSFYAPPDLDHHRRYAAAQCQQPPTMSATALLQKAAQIGAAASNATSLRGFGLALSSSYGQDNCSTGTGGGQWDRGNASSSNSLAVGLGLGLGLRSGSGLSDLMMSPSSTFGSQLMTRDLLGLGMAGSGPGGPVASRPRGLLALLTPFDGSFNVTAPTPYRGGDDGGGSPSRDAWDGGPPPDRKPSGPSFL 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13515979 13518942 - Conep04aG0195900.1 Cone4ag1898 436876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1898 554 MobiDBLite consensus disorder prediction 518 554 - -
Cone4ag1898 554 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Cone4ag1898 554 Gene3D Classic Zinc Finger 122 201 - -
Cone4ag1898 554 FunFam protein indeterminate-domain 12-like 47 115 - -
Cone4ag1898 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Cone4ag1898 554 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cone4ag1898 554 MobiDBLite consensus disorder prediction 302 326 - -
Cone4ag1898 554 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 143 167 - -
Cone4ag1898 554 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 105 139 - -
Cone4ag1898 554 Gene3D Classic Zinc Finger 48 117 - -
Cone4ag1898 554 MobiDBLite consensus disorder prediction 1 28 - -
Cone4ag1898 554 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 489 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone4ag1898 554 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Cone4ag1898 554 Pfam Zinc-finger of C2H2 type 68 90 IPR013087 -
Cone4ag1898 554 SMART c2h2final6 109 139 IPR013087 -
Cone4ag1898 554 SMART c2h2final6 144 164 IPR013087 -
Cone4ag1898 554 SMART c2h2final6 68 90 IPR013087 -
Cone4ag1898 554 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 170 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1898 Cone-Chr4:13515979 Cone7ag1220 Cone-Chr7:9051517 9.99E-101 dispersed
Cone4ag1898 Cone-Chr4:13515979 Cone6ag1610 Cone-Chr6:12459846 3.10E-123 wgd
Cone4ag1898 Cone-Chr4:13515979 Cone7ag1811 Cone-Chr7:11826012 2.54E-301 wgd
Cone4ag1898 Cone-Chr4:13515979 Cone9ag1538 Cone-Chr9:11184713 6.39E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46063 PF04782 DUF632 3.30E-112 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1898 K25869 - mdm:114826446 507.294