Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1904 ATGCTGGCAACATCTGAAAATGACGGGCAGATGGAACCCACTCCTAAGAAGAAGGATGTTTTCAGGCCATCCTTGCTTGACATGGAAACGGGTAGGCGTGACCGCTGGCGTGATGAAGAAAGAGACACCCATTCTTCAATGAAGAAAGACCGTTGGAGGGATGCCGAAAAAGAGCTTGGTGAGAATCGCAGGACAGATCGATGGAATGATAATTCATCGTCAAAACACTTTGGGGAGTCTCGTCGAATTTCATCAGAGAGGTGGACTGATTCGGGTAATACAGATACCAATTATGACCAACGACGTGAGAGCAAATGGAACACTCGTTGGGGACCTGATGACAAGGACACAGAAGGTTCGCATGAGAAGTGGGGGGTATCAGGGAAAGATGTTGATACATATGCTGAGAAAGGTTTGTCTCATGTTACTAATCATGGAAAGGATGATAAGGGTGGAGAACCTTACCGTCCGTGGCGACCTAGTATCACCCAAAACCGAGGAAAAGGAGCACCTAACCAAACTCTGACACCTAACAAACCAGTTTCTCCATTTTCCTACAATCGTGGCCGTGGGGAGAATCCTCCTGCAACCTTTTCTATGGGTCGTGGAAGGGTTGGCTCTGGAGGAAGCTTTACGAATACGACTTCTAATCAATCTCAGCCCCTGGGTTCTATCTTAGATAAATTTGAAGGCGACCATGGAGAGCCTTATCCCGTGAAGTATAATAGAATGAAATTGCTAGATGTATACCGCATGACTGATCTGAGAATGAATCAAGATGTAGCAGATGTATTTGTGCCAGTGCCTTCTCTTACCTTGGATGAACCCTTGGAGCCTCTAGCGCTTTGTGAACCAAATTTGGAGGAGAGGACTGCTCGGAAAGGAATTGATAAAGGCGATATTGTAAGTAGTGGTGCACCTCTAGTATTATCAAAGGATGGACGAAACTCATCCGATTTAACAGCACCAAGAAGAACCAAGCTTGGCAGCAGAGATGATCTACCTCATTCTCTTGATGAAAGCACAGAGGAAAGTTCTGATAGTATTAAATCTGGTAACATTAGTTACTCAGGTGGCTCTTCCTATGAAAGGCAGATGCTGTATCACAGTTCCCAATCGAAAATGGAGTCAACTCAGATTCAAGCTGGTACCAAGTTCAGTGATGAAGCTTTCAGAGAAGGTGGTAGTAGCAGAAAGGAAACCCCCATGGATAGGGAATCAATTGCTAAGGGAAGTGTTTCTGTTCATCCTAGTACTTCATGGCAGGCCTCACCTCTCGGAGATCGTGCTCACCAATTTCTGCCTGATAAGGGCTTCTTACTACCTTCAAAGGATCTTAATAATGAATGGGAGAGTAATTTGACTCGTACATCTTACTCTAGAGATGATGCAAAACACCCTGTTGGTGAGGACTCTAGTATCAGAAGGCAGCTATCTGGAATTCTGGAGAAGGAACAGAAGGCAAGGAAACCTTTGCAGTCTTCTCCAGAGGACCTATGGCTTTATTACAAAGATCCTGCTGGTGTAATTCAAGGGCCTTTTACAGGGCTTGATATTATTGGGTGGTTTGAGAGTGGGTATTTTGGCCTAGAATTGCCAGTCAGGGTGGCAAGTGCTCCAAATGACTTGCCATTTTCAACACTTGGTGATGTCATGCCCCATTTGCGATCTAAAGCCAAGCCGCCACCTGGTTTTACGGGTCCTAAACCGAATGAATCAACAGATCCAACCAGTAACCCAAGCTTCAGTGGCTTTGGCAAGCTTCACAGTGGTCTGAGTGAGATGGATAAAGTGAGGAATGAGACAAGGCCCAAACTTGGTTCTGCTACTGAAGCTGAAAATAGGTTCTTGGAGTCATTGATCTCTGGTAATTTGAGTGGCGTATCTCTGGAAAAATCTACTTTTTCTGAAGGTATGCAAGGTTATTTTGGAAATAATTCTAGTAGTTTGCCCTCCACGGGAGTGGATGATGGAAATAGTCTTCTTTTGCTGGCTAAACAAATGGCACTCGAAAGGCAGCAGTCTCTACCTAGCCCTTATCAGCACTGGTCTGGAAGAGATGCTGCGCCTATGGTCGCCAAGCCAGAAATTGGTCAGGACTCCTCTACAGCACATTTGAAACATCACACCCCTCAGTCGCAAGGTTCTGATTTGATGTCTATTCTCCAAGGCTTATCTGACAAATCAACATCTAGCATTAATAATGGTGCTCTGGGTTGCCCAAATTTTTCTGCTCAACGTGCCCCTGATCCACTTCAGAACAAGATTGACTTGCATTACGATCAGAATTTCCCTTCTCAAACATCATTTGGGATTCAACAACAGAGGTTGCAACCTCAGAATCAACCATTGATAAATCTACTTTCTCAGGCTGTTGAAAATCCCTCTGGTATTTCAGCAGCAGAGAAGTTACTCTCTTCTGGTCTACCCCGTGATCCACAATTGTTAAATGCAGTGCAACAGCAATATCTCTTGCAGTTACATTCCCAGTCTACATTTCCTACTCAGCAGATGCTACTGTTGGATAAAATCATGTTACTAAAGCAGCAGCAACAGAAACATGAGGAACAACAGCAGATATTAAGGCAGCAACAATTGCTCTCTCAGGTTCTATCAGATCACCATTCTAATCAGCATGTTAGTGAACAATCTTATGGACAGTTACCAGCTGCTCCAGTATCTACAGGGATTAAACCTGCAGATTCTCCTAGATTGCAGCCAACTCAGGAGATGCTTCATGTTGGCTTGCAACCGCCACTTTTTAATGTGCAGGATCGACAGGCTACGAATATAGGAAATTTGCCTATGCAAAGTACCCAGGATATGGGTTATGATGCCAGCTCAGAAAGCTCATCCTTTCTACTTCCGCATCAACTTTTTGGTAATATTCCCCGTCAGAGAAGTTGGGGTGTTACTCCTTTAGAACAGGTTACTGACATTCATCGGACAGAGATGTTATCAGCTCCAAAGTACAGATCAGCAGGGAATCCCAGTCTTCTACAGAAGCCCCATGCTACCTCTGAGTTTAATGGTACTGAAAAGTTGGGACAGACATCAGAGCAAGCTCTGAAAGCTGATACTGTCACAGTTTTAGAATCAGATTATGTACCTGCTGAGACTGCTGATGTCTCTGTTGCTGATAATGAAATGTCTGGTACTGAGAATGTTAATGACGTGAAGATCACACCAGAGAGTGTATATGAAGAACAGGAGGTTGAAAGGAATGCATGGAAAGATGATCACTGTACACAGGAAGAAGTGGAACAGGTTGATATTCCTGAACCTAGAAAAGCTTCTGAAAAGAAGTCTAAGAAGCAGAAATCTTCAAAGTCACACTCCACTTCCGAGCAGACTAAAATAGTGTCCAAGGCTCCTGTGCAGAACTCAAAGAAGCCTGACAATGGAAAACCAGAATCTGATGACTTGGAATTGGAGACAGATCTCTTTGAAGGGGATAACAAAGACAAGAAAACCTCTTCTGTACCTGGATATTCTCAAGCAGTACAGAGTTCAATACCTGCAAGTCTTTCTCTGGATGATGTTGAATCTGTAGAAGTCGTCAAGGATAAATCTTTACCTGTTGGATCTTCCTCTGGGCCAAACGCACAAACACAGAATGGACCTAGAGCTTGGAAGCATGCTCCTGGTTTCAAGGCCAAGTCCTTATTGGAAATTCAAGAGGAAGAGCAGAAAAGAGCGCAGACGGAAATGGTTGTACCTGAGGTCCCTTCTGTTAACCACCCCAGTTTGCCAACTCCTTGGGCTGGGATTGTGGCCTGTTCTGATGTTAGAGCTGTGAGAGAAACTCAGAGAGATTCTGGCAAGAACGAATCAAATGTTGTCAAATCTGAACCTTCACAGGATTCAAAGAGCAAGAAGAGCCAATTGCATGATATTTTGGCTGAAGAAGCTTTGCTGAAGTCTAGTGCAGGAGATGCTAAGGTTCCAGACTGTCCACCATTAATGACTGCACCTTCTGAATCTTTAGACAATGAAAACTTTATCGAGGCTAAAGAGACCAAAAAGAGCCGCAAGAAGTCTGCAAAAGCTAAGGGTGCTGGAACCAAGGCCTCAGCACCCACTGCTTCTGTTGAAATTCCTGTTAGTTCAAGTCCTGCTGAGAAGGCCAAAAGCACCCGTGCCGTACAGCCGGAGAAGGAAGTACTACCTGCCATCCCATCAGGACCTTCTTTGGGTGATTTTGTTCTATGGAAGGGAGAATCAACTGGCTCTTCTCCTACTCCAGCATGGTCTACTGACTCTGGAAAAGTCCCTAAACCAGCATCTTTAAGGGACATACAAAAGGAGCAAGAGAAAAGGTTTTCTTCACAGCACCCAAACCAAATGCCAACTCCTCAAAAATCCCAGCCAGCCCAAGCTGCCCGCAGCAATGCTCCTTCATGGGGTCTTTCTGCCACTTCTCCATCTAAGACTGCATCACCAATTCAGATAACCTTACAAGCTTCTCAGTCAAAAGTTAAAGCAGATGATGACTTATTTTGGGGCCCAATTGATCAGTCAAAGCAAGAAACTGAGCAGACTGATTTCTTCCCTCTTGCGACCCAAAACAGTTGGGGAGCCAAAAACACGCCTGGAAAAGGAACTTCAGCCAGTTTACTTAGTCGACAAAAGTCTAGTGGTAAAACTTCTGGAAACTTTCCTGCATCCTCTCCTGCTCAGTCATCTCTGAAAGGGAAAAGAGATGTGGTGACCAAGCATTCAGAAGCCACAGACTTCAGAGATTGGTGTGAGAGTGAATGTGTTAGGCTTATTGGAACCAAAGATACGAGCTTTCTTGAATTTTGCTTGAAGGAATCCAGATCAGAGGCTGAGCTGCTTCTGAAAGAGAACCTCGGGTCTTATGATCCAGACCATGAGTTCATAGAAAAATTCCTCAACTACAAGGAGTTGTTACCGTCAGATGTCCTTGACATTGCCTTTCAAAGTAGTTGGAATGATCGTAAGGCAATTGGATCAATAGCCAGAGATGTGATTTCCGATGACACGGGCATATGGGGGGATACTGACAGCAACAATCCCACAGTGGGCCCCAGTGAGGGTTCCACAAAGGGTGGAGGCTGCAAAAAGAAGGGGAAGAAAGGGAAGAAGGTAAGTCCAACAGTTTTGGGATTTAATGTTGTTAGCAACAGAATCATGATGGGTGAGATACAGACTGTTAAGGACTAG 5187 44.55 MLATSENDGQMEPTPKKKDVFRPSLLDMETGRRDRWRDEERDTHSSMKKDRWRDAEKELGENRRTDRWNDNSSSKHFGESRRISSERWTDSGNTDTNYDQRRESKWNTRWGPDDKDTEGSHEKWGVSGKDVDTYAEKGLSHVTNHGKDDKGGEPYRPWRPSITQNRGKGAPNQTLTPNKPVSPFSYNRGRGENPPATFSMGRGRVGSGGSFTNTTSNQSQPLGSILDKFEGDHGEPYPVKYNRMKLLDVYRMTDLRMNQDVADVFVPVPSLTLDEPLEPLALCEPNLEERTARKGIDKGDIVSSGAPLVLSKDGRNSSDLTAPRRTKLGSRDDLPHSLDESTEESSDSIKSGNISYSGGSSYERQMLYHSSQSKMESTQIQAGTKFSDEAFREGGSSRKETPMDRESIAKGSVSVHPSTSWQASPLGDRAHQFLPDKGFLLPSKDLNNEWESNLTRTSYSRDDAKHPVGEDSSIRRQLSGILEKEQKARKPLQSSPEDLWLYYKDPAGVIQGPFTGLDIIGWFESGYFGLELPVRVASAPNDLPFSTLGDVMPHLRSKAKPPPGFTGPKPNESTDPTSNPSFSGFGKLHSGLSEMDKVRNETRPKLGSATEAENRFLESLISGNLSGVSLEKSTFSEGMQGYFGNNSSSLPSTGVDDGNSLLLLAKQMALERQQSLPSPYQHWSGRDAAPMVAKPEIGQDSSTAHLKHHTPQSQGSDLMSILQGLSDKSTSSINNGALGCPNFSAQRAPDPLQNKIDLHYDQNFPSQTSFGIQQQRLQPQNQPLINLLSQAVENPSGISAAEKLLSSGLPRDPQLLNAVQQQYLLQLHSQSTFPTQQMLLLDKIMLLKQQQQKHEEQQQILRQQQLLSQVLSDHHSNQHVSEQSYGQLPAAPVSTGIKPADSPRLQPTQEMLHVGLQPPLFNVQDRQATNIGNLPMQSTQDMGYDASSESSSFLLPHQLFGNIPRQRSWGVTPLEQVTDIHRTEMLSAPKYRSAGNPSLLQKPHATSEFNGTEKLGQTSEQALKADTVTVLESDYVPAETADVSVADNEMSGTENVNDVKITPESVYEEQEVERNAWKDDHCTQEEVEQVDIPEPRKASEKKSKKQKSSKSHSTSEQTKIVSKAPVQNSKKPDNGKPESDDLELETDLFEGDNKDKKTSSVPGYSQAVQSSIPASLSLDDVESVEVVKDKSLPVGSSSGPNAQTQNGPRAWKHAPGFKAKSLLEIQEEEQKRAQTEMVVPEVPSVNHPSLPTPWAGIVACSDVRAVRETQRDSGKNESNVVKSEPSQDSKSKKSQLHDILAEEALLKSSAGDAKVPDCPPLMTAPSESLDNENFIEAKETKKSRKKSAKAKGAGTKASAPTASVEIPVSSSPAEKAKSTRAVQPEKEVLPAIPSGPSLGDFVLWKGESTGSSPTPAWSTDSGKVPKPASLRDIQKEQEKRFSSQHPNQMPTPQKSQPAQAARSNAPSWGLSATSPSKTASPIQITLQASQSKVKADDDLFWGPIDQSKQETEQTDFFPLATQNSWGAKNTPGKGTSASLLSRQKSSGKTSGNFPASSPAQSSLKGKRDVVTKHSEATDFRDWCESECVRLIGTKDTSFLEFCLKESRSEAELLLKENLGSYDPDHEFIEKFLNYKELLPSDVLDIAFQSSWNDRKAIGSIARDVISDDTGIWGDTDSNNPTVGPSEGSTKGGGCKKKGKKGKKVSPTVLGFNVVSNRIMMGEIQTVKD 1728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13544747 13552744 - Conep04aG0196500.1 Cone4ag1904 436882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 391 406 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1286 1300 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 391 426 - -
Cone4ag1904 1728 ProSiteProfiles GYF domain profile. 498 549 IPR003169 GO:0005515(InterPro)
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1672 1686 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1520 1564 - -
Cone4ag1904 1728 Coils Coil 844 867 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1443 1492 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 141 155 - -
Cone4ag1904 1728 SMART gyf_5 499 557 IPR003169 GO:0005515(InterPro)
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1672 1704 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1189 1214 - -
Cone4ag1904 1728 PANTHER GYF DOMAIN-CONTAINING PROTEIN 4 1728 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 165 183 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1 128 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1046 1060 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 303 357 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1158 1177 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1041 1177 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1113 1129 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 570 586 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1228 1253 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 555 589 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 325 346 - -
Cone4ag1904 1728 Gene3D - 484 566 IPR035445 -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 96 128 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 141 187 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1266 1496 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 412 426 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1362 1377 - -
Cone4ag1904 1728 CDD GYF 497 555 IPR003169 GO:0005515(InterPro)
Cone4ag1904 1728 Pfam GYF domain 502 537 IPR003169 GO:0005515(InterPro)
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 310 324 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 11 88 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1520 1568 - -
Cone4ag1904 1728 SUPERFAMILY GYF domain 490 555 IPR035445 -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1194 1208 - -
Cone4ag1904 1728 MobiDBLite consensus disorder prediction 1064 1101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1904 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0671 Cone-Chr11:4501521 Cone4ag1904 Cone-Chr4:13544747 2.10E-25 transposed
Cone18ag0835 Cone-Chr18:5641929 Cone4ag1904 Cone-Chr4:13544747 5.98E-33 transposed
Cone4ag1904 Cone-Chr4:13544747 Cone7ag1818 Cone-Chr7:11849744 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44