Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1905 ATGGCTTTACCCTCTTTAATCTCCGACACTGAGGCATGGAAGGACCTGAAGGCTCATGTTGAGGTTGTCAAGAAGACTCATTTACGTGATTTGATGAATGATCCGAAGCGATGCCAGTCCATGATGGTTGAGTATGACGACATACTCTTGGACTACTCAAGGCAACTTGCTACCCTTGAAACCGTGGGAAAGCTCTTCAAGTTGGCAGAGGCCGCAGGTTTGAAAGAGAAAATTGACCGCATGTACAATGGGGAGCATATTAATAGCACAGAGGGTAGGTCGGTACTGCATGTTGCTCTTCGTGCTTCAAGGGATGCTGTAATACAAAGTGATGGAAGGAATGTGGTCCCAGATGTTTGGAAAGTCTTGGATAAGATCCAAGAGTTTTCTGAGAAAGTCCGCAGCGGTTCTTGGGTTGGATCCACTGGAAAAGCACTAAAGGACGTTATTGCTGTTGGTATTGGTGGCAGCTTCTTAGGCCCTCTATTTGTACACACGGCTCTCCAAACAGATCCCGAGGCTATTGAAAGTGCTAGTGGACGCCAACTGCGATTTCTTGCCAATGTTGATCCTATAGATGCGGCCAGGAGTATCACAGGGTTAAACCCTGAAACCACTCTAGTTGTGGTGGTTTCAAAGACATTCACAACTGCTGAAACAATGCTGAATGCTCGAACACTTAGAGAATGGATTACAGCTGCTCTTGGGCCTTCTGCAGTTGCAAAGCACATGGTGGCAGTTAGCACCAACCTTGCACTTGTAGAGAAGTTTGGTATCGATCCTAACAATGCATTTGCATTCTGGGACTGGGTTGGTGGACGGTACAGTGTTTGCAGTGCTGTAGGAGTATTGCCTTTGTCTCTCCAATATGGTTTCTCAGTTGTCGAAAAGTTCTTGAAGGGAGCTTCAAGCATTGACCAGCATTTCTATTCATCGCCATTTGAGAAAAATATTCCTGTGCTTCTGGGTTTGTTGAGTCTGTGGAATGTTTCTTTTCTTGGGCATCCTGCAAGGGCCATCCTACCTTACTCCCAAGCCTTGGAGAAATTTGCACCACACATTCAGCAGGTTAGTATGGAGAGTAATGGTAAGGGGGTATCCATTGATGGTGTGGTTCTTCCGTTTGAGGCTGGGGAAATCGATTTTGGTGAGCCAGGCACTAATGGCCAGCACAGCTTTTACCAATTAATTCATCAGGGGCGTGTGATTCCTTGTGATTTTATTGGTGTTGTCAAGAGCCAACAGCCTGTTTACCTGAAAGGTGAAGTGGTGAGTAATCACGATGAGCTCATGTCTAACTTCTTTGCGCAGCCAGATGCCCTAGCATATGGGAAGACCCCTGAACAGTTGCAAAAGGAGAATGTTTCACCGCATCTTATTCCTCACAAGACTTTCTCGGGCAACCGGCCTTCTCTCAGCCTTCTTCTTCCTTCATTGAGTGCGTACAATATCGGCCAGTTGTTGGCATTGTATGAGCACAGAGTTGCTGTAGAAGGTTTCGTATGGGGCATCAATTCTTTTGATCAATGGGGTGTGGAGTTAGGGAAGTCGTTGGCCACACAAGTTAGAAAACAACTTAATCAATCCCGAACAAAAGGAGAACCTGTTGAAGGCTTTAACTTCAGTACTACAGCTTCATTAAACAGATATTTAAAGGAAAGTTGTGATATTCCATCAGATTTCCCCACTCGCCTGCCAAAGATCTAG 1707 45.64 MALPSLISDTEAWKDLKAHVEVVKKTHLRDLMNDPKRCQSMMVEYDDILLDYSRQLATLETVGKLFKLAEAAGLKEKIDRMYNGEHINSTEGRSVLHVALRASRDAVIQSDGRNVVPDVWKVLDKIQEFSEKVRSGSWVGSTGKALKDVIAVGIGGSFLGPLFVHTALQTDPEAIESASGRQLRFLANVDPIDAARSITGLNPETTLVVVVSKTFTTAETMLNARTLREWITAALGPSAVAKHMVAVSTNLALVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGASSIDQHFYSSPFEKNIPVLLGLLSLWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVVLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAYGKTPEQLQKENVSPHLIPHKTFSGNRPSLSLLLPSLSAYNIGQLLALYEHRVAVEGFVWGINSFDQWGVELGKSLATQVRKQLNQSRTKGEPVEGFNFSTTASLNRYLKESCDIPSDFPTRLPKI 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13554700 13560232 - Conep04aG0196600.1 Cone4ag1905 436883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1905 568 FunFam Glucose-6-phosphate isomerase 100 296 - -
Cone4ag1905 568 FunFam Glucose-6-phosphate isomerase 297 508 - -
Cone4ag1905 568 Pfam Phosphoglucose isomerase 51 544 IPR001672 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 ProSitePatterns Phosphoglucose isomerase signature 1. 269 282 IPR018189 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 SUPERFAMILY SIS domain 8 552 IPR046348 GO:0097367(InterPro)|GO:1901135(InterPro)
Cone4ag1905 568 CDD SIS_PGI_1 120 288 IPR035476 -
Cone4ag1905 568 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 10 553 IPR001672 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 CDD SIS_PGI_2 336 522 IPR035482 -
Cone4ag1905 568 ProSitePatterns Phosphoglucose isomerase signature 2. 499 516 IPR018189 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 6 553 IPR001672 GO:0004347(PANTHER)|GO:0004347(InterPro)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006094(InterPro)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0048029(PANTHER)|GO:0051156(PANTHER)
Cone4ag1905 568 Gene3D - 97 296 - -
Cone4ag1905 568 FunFam Glucose-6-phosphate isomerase 509 553 - -
Cone4ag1905 568 FunFam Glucose-6-phosphate isomerase 6 99 - -
Cone4ag1905 568 Gene3D - 509 554 IPR023096 GO:0004347(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 Gene3D - 12 508 - -
Cone4ag1905 568 PRINTS Glucose-6-phosphate isomerase signature 265 283 IPR001672 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 PRINTS Glucose-6-phosphate isomerase signature 467 485 IPR001672 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 PRINTS Glucose-6-phosphate isomerase signature 485 499 IPR001672 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 PRINTS Glucose-6-phosphate isomerase signature 149 168 IPR001672 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 PRINTS Glucose-6-phosphate isomerase signature 343 364 IPR001672 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 PRINTS Glucose-6-phosphate isomerase signature 499 512 IPR001672 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
Cone4ag1905 568 Hamap Glucose-6-phosphate isomerase [pgi]. 45 526 IPR001672 GO:0004347(InterPro)|GO:0006094(InterPro)|GO:0006096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1905 K01810 - - gmx:100807719 1006.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1168 Cone-Chr17:8591351 Cone4ag1905 Cone-Chr4:13554700 5.48E-36 dispersed
Cone20ag0562 Cone-Chr20:3139823 Cone4ag1905 Cone-Chr4:13554700 1.63E-36 dispersed
Cone4ag1905 Cone-Chr4:13554700 Cone7ag1820 Cone-Chr7:11861331 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g932 Blo01g01559 . Bda01g00534 . Bpe02g00396 . . Bma01g02316 Cmo05g00243 Cmo12g00427 . . . Car12g00451 . . Cpe07g00429 Bhi04g00254 . . . . . . Cla08g01496 Cam08g1986 Cec08g1561 Cco08g1698 Clacu08g1676 . Cre08g1459 Cone4ag1905 Cone7ag1820 . . . . . Cme03g01964 . . . . . . . . . . . Cma12g00477 Cma05g00235 Car05g00195 . Cpe11g00194 . . . . . . . . . . . . . . . Lsi08g01401 Csa02g02045 Chy03g01468 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004710 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 40