Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1918 ATGCCGTTTAAAAGCATAGTCCCTGAGCTGAGGGAGATGCGGTATGCCATTGGAAACAGAGGATCGGTAGAAGGAAGGCAAACACTTGGCAAAGGAAATTCCCTTATTGCCCCTGATCAATCATCTTCTTCATCATCTTCATCTTCGTCTTCTACAACGATTATGCAGCAGAGCCGTTGGGCAAACATGCCTCCGGAGTTGCTTTTGGACGTGATCCAACGGGTGGAAGCAAGTGCTTCCACGTGGCCTGCTAGGAGGGATGTTGTTGCTTGTGCTTCTGTTTGTAGGTCATGGAGGCTGATCACTAAAGAGGTTCTGAAGACTCCCGAACAATGTGGCTTGATCACTTTTCCTATTTCACTCAAGCAGCCGGGACCAAAAGATGCTCCGATCCAGTGTTTTATCAAGAGGGAAAGGGCAACTTCGACATACATACTCTACCTTGGTCTAAGCCCTGCTCTGTCTGGAGATATGAGCAAACTGTTGCTAGCAGCAAGAAAGATCAGACGGGCAACCAGCACCGAATTTGTGATATCATTAGCTGCAGATTATTTCTCTCGAGCTAGCAATACTTATATTGGAAAGCTAAGGTCGAATTTTCTTGGGACAAGGTTTTGCATTCTTGACAGCCAGCCTCCACATGACCCTTCATTGCAAACAAGTTGTAGATCGGAAAGAAGAATCCATTCGAAGCAAGTTTCTCCAAGAGTACCAGCCAGTAACTACAATGTAGCCACCATATGTTATGAGCTCAACGTCCTACGCACTAGAGGTCCAAGGAGAATGCAATGCACCATGCATTCAATACTCATCTCTGCTATTCAAGAAGGCGGCTCTGTGCCTACTCCTTCCGGGTTCATTAACTACCTTCACGAGAAGAGCAGTCAAACCTCTGTCTCAAAGGGGAAGAACAGAATGGGTGAGGATAGTAAGTCGACCTCATTAAGGACTGTTCGTGAACCGCCACTTGATGGTTCTAAGTATCCAATTGTGTTGCGAAACAAAGCTCCTAGATGGCATGAACAGCTTCAATGTTGGTGCTTAAATTTCAAAGGGCGTGTAACCGTTGCCTCCGTGAAGAATTTCCAACTGGTTGCCTCTGCAGAGTCTTCCCAAAATGTTCCACTTTGTGAACAAGAAAAAGTAATTTTACAGTTTGGTAAAATCGGGAAAGACATTTTTACTATGGATTATAGGTATCCACTCTCTGCATTTCAAGCTTTTGCCATCTGCTTGAGCAGCTTCGACACAAAACTGGCCTGTGAATGA 1269 45.23 MPFKSIVPELREMRYAIGNRGSVEGRQTLGKGNSLIAPDQSSSSSSSSSSSTTIMQQSRWANMPPELLLDVIQRVEASASTWPARRDVVACASVCRSWRLITKEVLKTPEQCGLITFPISLKQPGPKDAPIQCFIKRERATSTYILYLGLSPALSGDMSKLLLAARKIRRATSTEFVISLAADYFSRASNTYIGKLRSNFLGTRFCILDSQPPHDPSLQTSCRSERRIHSKQVSPRVPASNYNVATICYELNVLRTRGPRRMQCTMHSILISAIQEGGSVPTPSGFINYLHEKSSQTSVSKGKNRMGEDSKSTSLRTVREPPLDGSKYPIVLRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVASAESSQNVPLCEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13616392 13620599 - Conep04aG0198000.1 Cone4ag1918 436896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1918 422 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cone4ag1918 422 SUPERFAMILY F-box domain 49 103 IPR036047 GO:0005515(InterPro)
Cone4ag1918 422 PRINTS Tubby superfamily signature 176 192 IPR000007 -
Cone4ag1918 422 PRINTS Tubby superfamily signature 192 216 IPR000007 -
Cone4ag1918 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Cone4ag1918 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Cone4ag1918 422 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cone4ag1918 422 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cone4ag1918 422 PRINTS Tubby superfamily signature 241 268 IPR000007 -
Cone4ag1918 422 MobiDBLite consensus disorder prediction 297 319 - -
Cone4ag1918 422 CDD F-box_AtTLP-like 60 104 - -
Cone4ag1918 422 FunFam Tubby-like F-box protein 117 422 - -
Cone4ag1918 422 Gene3D - 54 107 - -
Cone4ag1918 422 SUPERFAMILY Tubby C-terminal domain-like 109 422 IPR025659 -
Cone4ag1918 422 Pfam Tub family 121 417 IPR000007 -
Cone4ag1918 422 PANTHER TUBBY-RELATED 43 421 - -
Cone4ag1918 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Cone4ag1918 422 Gene3D Tubby Protein; Chain A 118 422 IPR025659 -
Cone4ag1918 422 MobiDBLite consensus disorder prediction 26 56 - -
Cone4ag1918 422 MobiDBLite consensus disorder prediction 23 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1918 Cone-Chr4:13616392 Cone7ag1448 Cone-Chr7:10255177 2.33E-148 dispersed
Cone4ag1918 Cone-Chr4:13616392 Cone6ag1629 Cone-Chr6:12539797 1.60E-170 wgd
Cone4ag1918 Cone-Chr4:13616392 Cone7ag1830 Cone-Chr7:11921540 1.47E-269 wgd
Cone4ag1918 Cone-Chr4:13616392 Cone9ag1554 Cone-Chr9:11270251 1.65E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46068 PF13410 GST_C_2 3.20E-09 CL0497 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1918 K19600 - vvi:100253937 583.178