Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1922 ATGGAGTACAGGACGTCCTCTACTATGTACAAGAAACTTTCAAATGGACACAGTTTCAACGATAAATCAGCATACGACGGAGTTTTTGCCGCTCCGACGAAGAAAGTTGGGGCTCCGAACTTTCCGGCTCGAGTCGAAGATTTCAGTGAGATTTTCAGTGTCTCGAGAGGCTCTTCGATTCCGATTCTGGATATTCCGGCGCTAAACGAGAGAAAGCTTTCTGTTGACGTTCGGAGCTCCAATTTCGAGTATTCCAAGGTTTTTGGTGGCTTTGAAGAGTTAGATTTTGCAGTGCCTTATGATGATGAACACCTTTTGGTAGAGCCAAAGAAAATGAAAGCTACTTCTGTTGATCCCAAGAGCAGGACTGTGTCTAGAAAAAGTTCTTCTTTGACAAAGGAAGACCCTTTTGAATATCCAGAGGGGAAGGGAGTTTCATCACATGAAGCATCACCATTTCAGTCATTTGATAGTGGGAAGAAGTTCAGTGTGTCGTATCAAAAAACTAACCCCGGAAGCAAAAAGGGTACAAATGGGGCCACTCACATAGCTCAGCTTCATGCTGTCCCAGGTTATACACGCTTAATAGATGAAGCCACTCCCTTTAGTGGAGGTGATAAGCCGAAATCTGGAGTTTCAAAGGATGCTGAGGTAAAAAGTACTTTCAGTAAGGTGGCAGTGGAAGAAGGCAAACTATCTGGAGCAGTGAATGATGCTTGCCTAAAAAATAATTCGATCAAGGTGGAAATGGAAGAAAAGGTTTTTAAGGAAGATCTTTCGACTGTTGGTCCTACCAGACAGACTTCTAAATCTACTGAATATCACAATGCAACTGATTGGTTTAAATTGAGGTCAAGATCCAATTCAGTTGATTTTTTATTTGATGAATATAAAATAGATAAAACTGCAAAATCTCCTAAAGTTCCAGAAAATTCAAGAAAGCCACCCAAGTTTGGTAGAAGCCATGGTTATTCACATAGATCAATGGAGTTCAAATCTCGGGTTTGTGATGCTGGAAATGTTGATTCACCACCTTACTTTGAGGAGGAATTTGATGAGAATTCAGTTAATGCTGTCTCAGTAGCGGCTCTGAGAAAGGCAATAGAGGATGCTCAAGCAAGGATTAAATTTGTAAAGGATTCTCTGGAAAGAAGGAAGGATAGTCAAAATCAGTGGAAACCAGGTTTTAGAAATGGGGTGAATACAAGGAGAGGGGAGAAAAAGATTTCAGGCAATGCCAGTAAACCTAAAGGGAAGAAGGTTGAAGAAACGTGCAGAAACACTAATATTCTACTTCAAACTACTTCAGGTAGTGCAAAGCAAAATTCAACTCAGGCAAACACACAAGCAGCTGCTGTAGAAACATATACGAAGGTATTTGAGTCGAATCAAGTTAATTGTACTCAGGGAGAAGCCGAACATTCTGATGGAGAAGAATGCTGGTATGATCTGGATAATGCATTTGAAGACGAAGCGAGAAGACCAGGGCTTGAAAATGCAGTTCATACAAATAAGGATCTGCAGTTTGTTAATGACTATGAGCAGAGGGAAAGTCAAGAGGCCAATTTAACTTTTGAGAATCTAGAAAACTCTGATGAGAGATTGGCAAGATTTGACAAGGCTCGTGAGCAGGAGAAGATAGAAAAGAGAAACGGAGAAGGCGATTTTGGTGAATATGTGTGCGTATCAAAGTCACAGCAGGAGATTCACAATCAGGAGGATAAACAGAAGAGAATAGAAGTTTCTCAACAAATGGAAGAAATGAGAATTCAAGTTGCAACCCATGAAGAGGAAACTTGTCAAAAGATGCAGGAAGAGTCACAGGGTCCAACAGAAGACAGTAAAGTTGAGACCAAAGAATCAGATGAGAACAAAATTGCAAAGATACAAATACAGGATCCTGAGTGGGTGGATAAAGAAGAGATGAAAAGGGGTTTGAAGCAAAAAGAAAATGAGATTGACCAGAAGAATGTGAATATTCATATGGGCGAGGAAACTGAAAAGGAACAGGATAAAGTTGATGAACAGGAAATAGAAACAAACTGGAATAATGACTTCTGTAATGGGGAAGAAACTGAGGAACTTGAAAACAATGATGTTACAGAGGGTGGAGAGAATGAGAAGATGTTTGGAGGGTTTTCAGAACATATGGAAGAAAATGAAAAGAGATATGAACCAATTGATGAAGTGAAAGGGATACAGACACAAATTGATAAAAGTGCAGAAGTTGAGGACTTGGCAGAAGAAAGTCAAGAGGATCTGAAGTACTGTGAGAATAAGCTTGAGAAAGCTACCGATTTCTGTGTGCACTCTGAAAGTGAAATTCTAGTGGAAGAGGAGGGAGCAAGTAGACCTGTAGAAACTGATCTAACTATGGAAGTCACTGATGAAGTTAAGGAAGTAGTTGATCAAGATGTGGAAGTAATTCTTGAAGTGCCTAAATATGAAGAGACTGGAAATGTAATTGAAGTAACTGAAGCAGCGGAAAATATTGAGAACGATTCAGAAGGAGAATTAGGGGAAGCTGACAGGGTGGAAAAAACTCTCCTTAGAACAGCTTCCCTTGATGGAGGTGTCCTCAGAGAAGAAACAAATAAAATGGAAGATATAATAGATACCCTTGTTTCTGATCCATACCCATGTGGAATGAACTTTGGTGAATTTAATACGGAATGTGGAAATATGCAAGATGACAAGCATGAGAAAGACACCAGCAATGCCAGCATTTTGGAAAACCATGCTGAAGAATTAGCTCCTGACTTGGATGAGATGATTATGAACGTTGAGGAAGCTGAAGTAGCAATCGAGGAAACAGATGAGACTAATTCTAGGTCGGAGGAGAATATTTCTCAGTCCTCCCATGGAGAAGGATTGCTTGATGATTTAGAAAATGATGAAACAGGTCTGCCATTCAGGACTTCAGAAAAATACGAGGATTCCACTGAAATTGTTGAGGAGTCCATAACAAGCCAAGGTACAACAGAAAATGAGGAGAATCATTCTGAGAACCTGACAATGGAAGGGAAGGAAAGTAACTATGGTAGCAATATTGAAGAATCTCTGCAATCTGGCACATTTGAAGGTTACAGAACCATGGAGCTAGCTCGGGAGATCAACAGAAGCCAAAGTGCAACTGAAACCGAAGAGGATAGAGAAGAAACGGAGACAGTAGAAGACATGGATGCCACTGATGCTTTGGAGAAAGAAGCGGAGCTGAAATTTCATGTAGAACCAATTGAAGTAGTTGAGCAGCATAGTTTGCCTGAAAGAAGAGAGGAAACAACTGTGGAGACCGCGCAAGAGATCATAACAAGCCCAAGTATTAGACAACATGGGGAGAACCACCAAACAACCGTAACATTTGAGGAGATAGAAACTGATGATAAATTGCAAGAAGAAGGGGGGATGGAATCTGAAGTGAACAACCAGAGAGCAGAGCAGGCGCCTGGCATGCCTCAAGGAAAGGGAACAGATAGGGAAATTTCTGAGGAAATCAAAACAAGACAGAGCGCTCTGGAAAATGAGGAGAATCATCAATCAACCATAACAATAGAGGTGAAGGAGACCAATGAAAAAAGTGAAAAAGAGATGGAGCTAGAAAAGAAGCAGAGAAAAATAATAGAAGCAAGTGAAAGGGAAAGGGAGAGAGAAAGAGAGAAAATAGCTGTAGAAAGAGCAATCCGGGAGGCTCGTGAAAGGGCATTTGCTGAAGCACGTGAAAGAGCTGCTGCAGAGAGAGCGTCTGCTGAAAATCACAGAAGACAGGTGGCTGAAGGAAGGGAAAGAACAACAAAAACTCCTATGGGGAATAATGATAATAACGGAGCTGAGAAGGCTTCTGTGGAAGCCAAGCTAAAAGCTGAACGTGCTGCTGTTGAGAGGGCTACTGCAGAGGCTAGGGAGCGCGCACTAGAGAAAGCAATATCTGAAAAGGCTTTCCTGGAGGCAAGGAACCTTGCTGAGAAAATGGTTTCAGATCAATTGTCTACCGCTACAGGGGATAGATGGGGCTATTCATCAAAAGGTTCGCAGCAGAAAGCATCAAGTTCTTCCTGCAGTTCAAGATATGAAAGTGCTTCAAATAATGGAGCTGCTGAATCATCTGAGAGATTCACTGGGTCGGCTGGGGAATCAGCTCAGAGGAGTAAAGCCAGGTTGGAGAGGCATCAACCGACAGTGGAGCGTGTGGCAAAAGCTCTTTCAGAGAAGAATATCGGTGACCTTCTTGCACAGAAAGAGCAAGCAGAGAGAAATAGATTAGCTAAAGCCCTCGATGCTGATGTTAAGAGATGGTCAAGTGGGAAGGAAGGAAACTTGCGTGCATTGCTTTCAACCTTACAATTTGTTCTTGGGCATGATAGTGGCTGGCAAGCAATTCCTCTATCAGATATAGTCACAGCGGCTGCTGTCAAGAAAGCTTACCGTAAAGCAACTCTCTTTGTTCATCCGGACAAATTGCAGCAACGTGGTGCTACCATTCAGCAGAAATACATCTGTGAAAAGGTTTTTGATCTTCTAAAGGCAGCTTGGAATCGGTTCAACAGAGAAGAGCGGTAG 4557 41.74 MEYRTSSTMYKKLSNGHSFNDKSAYDGVFAAPTKKVGAPNFPARVEDFSEIFSVSRGSSIPILDIPALNERKLSVDVRSSNFEYSKVFGGFEELDFAVPYDDEHLLVEPKKMKATSVDPKSRTVSRKSSSLTKEDPFEYPEGKGVSSHEASPFQSFDSGKKFSVSYQKTNPGSKKGTNGATHIAQLHAVPGYTRLIDEATPFSGGDKPKSGVSKDAEVKSTFSKVAVEEGKLSGAVNDACLKNNSIKVEMEEKVFKEDLSTVGPTRQTSKSTEYHNATDWFKLRSRSNSVDFLFDEYKIDKTAKSPKVPENSRKPPKFGRSHGYSHRSMEFKSRVCDAGNVDSPPYFEEEFDENSVNAVSVAALRKAIEDAQARIKFVKDSLERRKDSQNQWKPGFRNGVNTRRGEKKISGNASKPKGKKVEETCRNTNILLQTTSGSAKQNSTQANTQAAAVETYTKVFESNQVNCTQGEAEHSDGEECWYDLDNAFEDEARRPGLENAVHTNKDLQFVNDYEQRESQEANLTFENLENSDERLARFDKAREQEKIEKRNGEGDFGEYVCVSKSQQEIHNQEDKQKRIEVSQQMEEMRIQVATHEEETCQKMQEESQGPTEDSKVETKESDENKIAKIQIQDPEWVDKEEMKRGLKQKENEIDQKNVNIHMGEETEKEQDKVDEQEIETNWNNDFCNGEETEELENNDVTEGGENEKMFGGFSEHMEENEKRYEPIDEVKGIQTQIDKSAEVEDLAEESQEDLKYCENKLEKATDFCVHSESEILVEEEGASRPVETDLTMEVTDEVKEVVDQDVEVILEVPKYEETGNVIEVTEAAENIENDSEGELGEADRVEKTLLRTASLDGGVLREETNKMEDIIDTLVSDPYPCGMNFGEFNTECGNMQDDKHEKDTSNASILENHAEELAPDLDEMIMNVEEAEVAIEETDETNSRSEENISQSSHGEGLLDDLENDETGLPFRTSEKYEDSTEIVEESITSQGTTENEENHSENLTMEGKESNYGSNIEESLQSGTFEGYRTMELAREINRSQSATETEEDREETETVEDMDATDALEKEAELKFHVEPIEVVEQHSLPERREETTVETAQEIITSPSIRQHGENHQTTVTFEEIETDDKLQEEGGMESEVNNQRAEQAPGMPQGKGTDREISEEIKTRQSALENEENHQSTITIEVKETNEKSEKEMELEKKQRKIIEASEREREREREKIAVERAIREARERAFAEARERAAAERASAENHRRQVAEGRERTTKTPMGNNDNNGAEKASVEAKLKAERAAVERATAEARERALEKAISEKAFLEARNLAEKMVSDQLSTATGDRWGYSSKGSQQKASSSSCSSRYESASNNGAAESSERFTGSAGESAQRSKARLERHQPTVERVAKALSEKNIGDLLAQKEQAERNRLAKALDADVKRWSSGKEGNLRALLSTLQFVLGHDSGWQAIPLSDIVTAAAVKKAYRKATLFVHPDKLQQRGATIQQKYICEKVFDLLKAAWNRFNREER 1518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13635799 13641910 + Conep04aG0198400.1 Cone4ag1922 436900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1922 1518 Gene3D DnaJ domain 1392 1518 IPR036869 -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1239 1261 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1332 1379 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1098 1115 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1157 1173 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1180 1203 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1128 1203 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 958 983 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 590 709 - -
Cone4ag1922 1518 Coils Coil 1190 1233 - -
Cone4ag1922 1518 Coils Coil 361 381 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 127 142 - -
Cone4ag1922 1518 SUPERFAMILY Chaperone J-domain 1375 1517 IPR036869 -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1239 1282 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 984 999 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 389 421 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1083 1097 - -
Cone4ag1922 1518 Coils Coil 1278 1317 - -
Cone4ag1922 1518 Coils Coil 1235 1255 - -
Cone4ag1922 1518 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 900 1518 - GO:0005737(PANTHER)|GO:0030276(PANTHER)|GO:0031982(PANTHER)|GO:0043231(PANTHER)|GO:0072318(PANTHER)|GO:0072583(PANTHER)
Cone4ag1922 1518 Coils Coil 578 598 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 935 1015 - -
Cone4ag1922 1518 FunFam Auxilin-related protein 1 1389 1518 - -
Cone4ag1922 1518 Coils Coil 1398 1418 - -
Cone4ag1922 1518 Coils Coil 921 948 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1083 1116 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 400 421 - -
Cone4ag1922 1518 Coils Coil 528 548 - -
Cone4ag1922 1518 Coils Coil 639 666 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1332 1391 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 1037 1066 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 113 156 - -
Cone4ag1922 1518 ProSiteProfiles dnaJ domain profile. 1454 1518 IPR001623 -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 590 679 - -
Cone4ag1922 1518 MobiDBLite consensus disorder prediction 304 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1922 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1922 Cone-Chr4:13635799 Cone6ag1245 Cone-Chr6:9917875 1.02E-50 dispersed
Cone4ag1922 Cone-Chr4:13635799 Cone6ag1638 Cone-Chr6:12565717 5.99E-61 wgd
Cone4ag1922 Cone-Chr4:13635799 Cone7ag1834 Cone-Chr7:11939248 0 wgd
Cone4ag1922 Cone-Chr4:13635799 Cone9ag1558 Cone-Chr9:11288162 1.82E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g969 Blo01g01570 . . . . . . Bma01g02328 . . Cma01g01918 . Car01g01499 . . . . . . . . . . . . . . . . . . Cone4ag1922 Cone7ag1834 . . Lsi04g01688 Csa03g04228 Chy04g00487 . . . . . . . . . . Cmo01g01981 . . . . . . Cpe02g00118 . . . . . . . Cla05g01924 Cam05g2061 Cec05g2074 Cco05g2125 Clacu05g2055 Cmu05g1932 Cre05g2055 . . . Cme04g00546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35