Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1930 ATGGGTCGTTTTGATGGAAGAGAACGGAAATCTGATTATGAAAATTCAGAGGATGAAAAGCAGACGAGGATTGAGAAACTGAAGAAGAAAGCAAAGAATGCATCTAGTAAATTCCGGCATTCTCTTAAGAGAAAGGGCAGGAGACGAGGTGGGAGCTCAAGTAATACTATTTCGATTGAGGATGTCCGGGATATCGAGGAACAACGAGTTGTAGAAGCATTTCGACAGGCGCTTATTTCGGATGATTTGCTTCCCCTAAGACATGATGACTACCATATGATGCTGAGATTCCTGAGGGCAAGGAAGTTTGATATGGAGAGAGCTAAACAGATGTGGGTCAATATGCTCCAATGGAGGAGAGATTTTGGTACTGACAATATTATGGAGGATTTTGAGTACAATGAATTGGATGAAGTGTTAAAGTACTACTCTCAGGGTTATCATGGTGTAGATAAAGAAGGAAAGCCTGTTTACATTGAAAGACTCGGAAAAGTAGATGCGGACAAGCTTATGCAAGTGACTACTATGGAACGGTATGTAAATTACCATGTCCAGGAGCTTGAAAGGATTTTTTCAGTTAAGTTTCCAGCCTGTTCTATTGCTGCAAAGAGATGCATTAATTCATTTACGACGATTTTAGATGTTCAAGGCGTGGGTTTAAAAAACCTTAACAAATCTGCACGAGATCTCATCATTCGCCTGCAGAAGATTGATAATGACAACTACCCTGAGACACTTCATAAAATGTTCATCATTAATGCTGGCAGCGGCTTTAAGTTTCTCTGGAATACAGTAAAATCATTTATTGATCCAAAAACAGTCATGAAGATTCAGGTTCTCGGTCAGGATTACCAGAGCAAACTACTTGAAGTAATTGATGCAAGTGAGTTGCCAGAATTTATAGGCGGTAGCTGTACCTGTGCTGAAAAGGGAGGTTGTTCGAGGTTCAATAAGGGGCCATGGAGTGATCCTGACATATTAAAGATGGTTCTGAGTGGTGAAGCACAACGTTCCAGACAAATAGTGACAATTTCAAAAAGTGAGGGAAGGGTAATTTCATGCGATAAGCCAACATATTCGGCAATGAGAGGCAGTGACTCGTCTACAGCAGAGTCGGGTTCTGAAGTTGAAGAAATTGTTTCTCCTAAAGCATTTAGGAGCTATGTCAAACCTAGTCTAGCTTCTGTTTGTGAAGATGCTAGGGCGGTTTTCAAGGTGACCGATCCTGATGGCTTCTCAGAGTATGAAGAATATGTTCCAATGATTGACAAAGTAGTGGATTCGAGTTGTAACAGAAAAGACTCGCCTCAAAAAACAATTGCCTCTGGAGGGGATCTTTCTCCAACGAGGAGGAAAACTACAGAAGGAAGCAATGCTCGTATCTGGACTGTAGTTTTGACCTTATGCGCCAGTTTCTTCACTCTCATCCAATCACGAGCTTTCCAGGCGAGAAAGAAACACCCCAATTCTACCAGCTCTGATGTTAGGCCCAGCGTACCTGTCTCTGAAGAGCCAATTGTGGAGGAGTCTGGATCCACATATTCAACTCCGGAGCCGACTACTGCTGAAGAAGATATCTCATCTGTTTTAAAAAGAGTGAGCAAGCTTGAGGATCTGGTACAAGTTTTGCAGGCAAAGCTGTTCCAGGTGTGTTCTGAGAAAGAGGAGTTGCTTAATGCGTCTATTTGTCGTGTGGATGCACTTGAAGCAGAACTAATATCTACAAAGATGGCCTTGCACGAAGCTTTGATAAGCCAAGATGAGCTTTTAGCATTTGTAGACAGGCAAGAACTCCAATTCAGGGTAGAAGAGAAAGAAGATTTGTTGGTAAAAGGAGCCATTGCTGTATCGGAGGAATTGCCGGGCAGTTCCAATTTTTCAACTGGAACGGTGGGAGTCATCTTTGTCTATGTTGTGTACTAG 1923 42.17 MGRFDGRERKSDYENSEDEKQTRIEKLKKKAKNASSKFRHSLKRKGRRRGGSSSNTISIEDVRDIEEQRVVEAFRQALISDDLLPLRHDDYHMMLRFLRARKFDMERAKQMWVNMLQWRRDFGTDNIMEDFEYNELDEVLKYYSQGYHGVDKEGKPVYIERLGKVDADKLMQVTTMERYVNYHVQELERIFSVKFPACSIAAKRCINSFTTILDVQGVGLKNLNKSARDLIIRLQKIDNDNYPETLHKMFIINAGSGFKFLWNTVKSFIDPKTVMKIQVLGQDYQSKLLEVIDASELPEFIGGSCTCAEKGGCSRFNKGPWSDPDILKMVLSGEAQRSRQIVTISKSEGRVISCDKPTYSAMRGSDSSTAESGSEVEEIVSPKAFRSYVKPSLASVCEDARAVFKVTDPDGFSEYEEYVPMIDKVVDSSCNRKDSPQKTIASGGDLSPTRRKTTEGSNARIWTVVLTLCASFFTLIQSRAFQARKKHPNSTSSDVRPSVPVSEEPIVEESGSTYSTPEPTTAEEDISSVLKRVSKLEDLVQVLQAKLFQVCSEKEELLNASICRVDALEAELISTKMALHEALISQDELLAFVDRQELQFRVEEKEDLLVKGAIAVSEELPGSSNFSTGTVGVIFVYVVY 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13658176 13661452 - Conep04aG0199200.1 Cone4ag1930 436908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1930 640 MobiDBLite consensus disorder prediction 1 31 - -
Cone4ag1930 640 Coils Coil 10 37 - -
Cone4ag1930 640 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 596 IPR051026 -
Cone4ag1930 640 Pfam CRAL/TRIO, N-terminal domain 87 114 IPR011074 -
Cone4ag1930 640 MobiDBLite consensus disorder prediction 486 521 - -
Cone4ag1930 640 Gene3D - 123 333 IPR036865 -
Cone4ag1930 640 PRINTS Cellular retinaldehyde-binding protein signature 93 115 - -
Cone4ag1930 640 PRINTS Cellular retinaldehyde-binding protein signature 262 281 - -
Cone4ag1930 640 MobiDBLite consensus disorder prediction 32 50 - -
Cone4ag1930 640 SMART CRAL_TRIO_N_2 90 115 IPR011074 -
Cone4ag1930 640 Pfam CRAL/TRIO domain 141 303 IPR001251 -
Cone4ag1930 640 SUPERFAMILY CRAL/TRIO domain 134 329 IPR036865 -
Cone4ag1930 640 MobiDBLite consensus disorder prediction 429 454 - -
Cone4ag1930 640 MobiDBLite consensus disorder prediction 432 454 - -
Cone4ag1930 640 FunFam SEC14 cytosolic factor 123 335 - -
Cone4ag1930 640 CDD SEC14 136 303 IPR001251 -
Cone4ag1930 640 Gene3D - 55 122 - -
Cone4ag1930 640 Coils Coil 220 240 - -
Cone4ag1930 640 MobiDBLite consensus disorder prediction 1 55 - -
Cone4ag1930 640 SUPERFAMILY CRAL/TRIO N-terminal domain 65 131 IPR036273 -
Cone4ag1930 640 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 135 309 IPR001251 -
Cone4ag1930 640 SMART sec14_4 135 306 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1930 K26544 - - vvi:100248963 722.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1930 Cone-Chr4:13658176 Cone8ag1211 Cone-Chr8:10274433 2.36E-226 dispersed
Cone12ag1161 Cone-Chr12:9242558 Cone4ag1930 Cone-Chr4:13658176 6.98E-160 wgd
Cone17ag1356 Cone-Chr17:9475939 Cone4ag1930 Cone-Chr4:13658176 8.26E-252 wgd
Cone20ag0126 Cone-Chr20:561561 Cone4ag1930 Cone-Chr4:13658176 3.71E-194 wgd
Cone4ag1930 Cone-Chr4:13658176 Cone7ag1842 Cone-Chr7:11961413 1.67E-285 wgd
Cone4ag1930 Cone-Chr4:13658176 Cone8ag1210 Cone-Chr8:10270462 9.90E-168 wgd
Cone4ag1930 Cone-Chr4:13658176 Cone9ag1571 Cone-Chr9:11324351 3.25E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1930 . Cone17ag1356 Cone20ag0126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00398 Cam11g0444 Cec11g0439 Cco11g0431 Clacu11g0567 Cmu11g0423 Cre11g0908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029830 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2